Factsheet for Bra036854.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002788.1-P	nucleus
Bra006851.1-P	nucleus
Bra010563.1-P	nucleus
Bra012883.1-P	nucleus
Bra019118.1-P	nucleus
Bra026461.1-P	nucleus
Bra035633.1-P	nucleus
Bra036854.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50870.1	Bra012883.1-P	AT3G50870.1	23335616
AT3G50870.1	Bra036854.1-P	AT3G50870.1	23335616
AT3G50870.1	Bra012883.1-P	AT3G50870.1	23335616
AT3G50870.1	Bra036854.1-P	AT3G50870.1	23335616
AT3G50870.1	Bra019118.1-P	AT4G26150.1	23335616
AT3G50870.1	Bra026461.1-P	AT4G26150.1	23335616
AT3G50870.1	Bra019118.1-P	AT4G26150.1	23335616
AT3G50870.1	Bra026461.1-P	AT4G26150.1	23335616
AT3G50870.1	Bra010563.1-P	AT4G36620.1	23335616
AT3G50870.1	Bra010563.1-P	AT4G36620.1	23335616
AT3G50870.1	Bra002788.1-P	AT5G56860.1	23335616
AT3G50870.1	Bra006851.1-P	AT5G56860.1	23335616
AT3G50870.1	Bra035633.1-P	AT5G56860.1	23335616
AT3G50870.1	Bra002788.1-P	AT5G56860.1	23335616
AT3G50870.1	Bra006851.1-P	AT5G56860.1	23335616
AT3G50870.1	Bra035633.1-P	AT5G56860.1	23335616

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77958	Canola	nucleus	91.0	98.87
CDX73777	Canola	nucleus	96.19	95.86
AT3G50870.1	Thale cress	cytosol	83.05	81.36
Bra012883.1-P	Field mustard	nucleus	76.47	79.5
Bra010563.1-P	Field mustard	cytosol	39.79	53.99
Bra011695.1-P	Field mustard	nucleus	40.48	52.47
Bra017766.1-P	Field mustard	nucleus	34.26	52.38
Solyc02g085190.1.1	Tomato	plastid	43.6	50.0
PGSC0003DMT400009031	Potato	plastid	41.52	48.58
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	22.84	48.18
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	39.45	47.5
Bra012080.1-P	Field mustard	nucleus	38.06	46.61
PGSC0003DMT400040074	Potato	nucleus	37.37	43.55
Solyc02g062760.2.1	Tomato	nucleus	37.37	42.52
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	31.49	39.22
KRH43324	Soybean	nucleus	17.99	38.24
Zm00001d043969_P001	Maize	endoplasmic reticulum	29.41	36.48
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	25.26	35.96
KXG33047	Sorghum	extracellular	30.1	35.66
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	27.34	35.27
GSMUA_Achr7P25620_001	Banana	nucleus	28.37	35.19
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	25.61	35.07
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	27.68	34.78
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	27.68	34.48
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	28.72	34.3
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	27.68	34.19
Bra037221.1-P	Field mustard	nucleus	28.03	34.18
Bra009926.1-P	Field mustard	cytosol	9.34	34.18
Os05t0567900-00	Rice	cytosol, extracellular, plastid	29.41	34.0
EES19963	Sorghum	mitochondrion, nucleus, vacuole	26.3	33.19
Bra036600.1-P	Field mustard	nucleus	10.38	29.13
Bra037421.1-P	Field mustard	nucleus	12.11	27.56
Bra020650.1-P	Field mustard	nucleus	12.8	26.43
Bra040288.1-P	Field mustard	nucleus	11.07	23.02
Bra022184.1-P	Field mustard	nucleus	12.46	21.69
Bra033533.1-P	Field mustard	nucleus	12.11	19.55
Bra012742.1-P	Field mustard	nucleus	11.07	19.16
Bra021209.1-P	Field mustard	nucleus	11.07	18.71
Bra035633.1-P	Field mustard	nucleus	16.95	16.28
Bra006851.1-P	Field mustard	nucleus, plastid	18.34	13.8
Bra026461.1-P	Field mustard	nucleus	16.26	13.06
Bra002788.1-P	Field mustard	nucleus	17.3	12.92
Bra019118.1-P	Field mustard	nucleus	16.95	12.63
Bra001644.1-P	Field mustard	nucleus	5.19	10.27

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra036854	EnsemblPlants:Bra036854.1	EnsemblPlants:Bra036854.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0006366	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009908	GO:GO:0009909
GO:GO:0009987	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088
UniProt:M4F6Z4	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF305
SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI0002542BF7	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg

Description

AT3G50870 (E=1e-122) MNP | MNP (MONOPOLE); transcription factor

Coordinates

chrA09:+:25397401..25398645

Molecular Weight (calculated)

31170.7 Da

IEP (calculated)

7.985

GRAVY (calculated)

-0.718

Length

289 amino acids

Sequence
(BLAST)

001: MMQTPYNTSM QGQYCHSCGM FHHHNQSSCY NNNSNAGSYS TVFSMQSGGV YEPNGEDYYS SSVVDCTLSL GTPSTRLCEE DEKRRRSTPS GASSCISNFW
101: DLLQNKNNNN SKMTPSNVPS YSIANSIKPG RGCSGGNGSG GGDSLLARRC ANCDTTSTPL WRNGPRGPKS LCNACGIRFK KEERRTTAAS VNAVVGAAPV
201: AVDHYSHHNA GYNNYSIATG NNNNGTLWGH HTTQRVPCNY PANEIRFMDD YGGAGASNCD SDGGHGGVPF LSWRLNVADR ASLVHDFTR

Best Arabidopsis Sequence Match ( AT3G50870.1 )
(BLAST)

001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR

Arabidopsis Description

GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.