Factsheet for Bra002788.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra040510.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56860.1	Bra040510.1-P	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32755	Canola	nucleus	100.0	100.0
CDY32891	Canola	nucleus	94.57	94.33
Bra035633.1-P	Field mustard	nucleus	62.53	80.4
Bra006851.1-P	Field mustard	nucleus, plastid	79.59	80.21
AT5G56860.1	Thale cress	nucleus	80.88	78.64
Bra026461.1-P	Field mustard	nucleus	46.51	50.0
Bra019118.1-P	Field mustard	nucleus	49.1	48.97
Bra009926.1-P	Field mustard	cytosol	8.79	43.04
KRH19153	Soybean	nucleus	32.04	39.49
Bra036600.1-P	Field mustard	nucleus	10.34	38.84
KRH02716	Soybean	nucleus	31.78	38.2
GSMUA_Achr8P24880_001	Banana	nucleus	20.93	37.16
Bra037421.1-P	Field mustard	nucleus	11.89	36.22
KRH12382	Soybean	nucleus	28.17	34.6
Bra040288.1-P	Field mustard	nucleus	12.4	34.53
Bra020650.1-P	Field mustard	nucleus	12.14	33.57
KRH37384	Soybean	nucleus	27.39	31.45
Bra022184.1-P	Field mustard	nucleus	12.66	29.52
TraesCS7A01G363100.1	Wheat	nucleus	27.13	29.49
TraesCS7D01G359900.1	Wheat	nucleus	26.61	28.69
HORVU7Hr1G086810.1	Barley	nucleus	26.61	28.61
TraesCS7B01G264800.1	Wheat	nucleus	26.36	28.25
Bra021209.1-P	Field mustard	nucleus	12.4	28.07
Zm00001d046354_P001	Maize	nucleus	26.61	27.84
TraesCS6A01G185900.1	Wheat	cytosol	24.29	27.49
EER88552	Sorghum	nucleus	27.13	27.2
Os02t0220400-01	Rice	nucleus	24.81	27.2
TraesCS6D01G173000.1	Wheat	cytosol	24.03	27.19
Bra033533.1-P	Field mustard	nucleus	12.4	26.82
Zm00001d016361_P001	Maize	nucleus	25.58	26.76
HORVU6Hr1G039720.2	Barley	cytosol	23.77	26.74
TraesCS6B01G214900.1	Wheat	cytosol	23.51	26.61
Bra012742.1-P	Field mustard	nucleus	11.11	25.75
Os06t0571800-02	Rice	nucleus	23.0	25.65
KXG29816	Sorghum	nucleus	24.81	24.81
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	8.27	23.36
Bra017766.1-P	Field mustard	nucleus	10.08	20.63
Bra001644.1-P	Field mustard	nucleus	7.75	20.55
Bra011695.1-P	Field mustard	nucleus	11.63	20.18
Bra010563.1-P	Field mustard	cytosol	10.85	19.72
Bra012883.1-P	Field mustard	nucleus	13.18	18.35
Bra037221.1-P	Field mustard	nucleus	10.85	17.72
Bra036854.1-P	Field mustard	nucleus	12.92	17.3
Bra012080.1-P	Field mustard	nucleus	10.08	16.53

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra002788	EnsemblPlants:Bra002788.1	EnsemblPlants:Bra002788.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4CF06	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF191	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI0002544BF0
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

AT5G56860 (E=3e-134) GNC | GNC (GATA, nitrate-inducible, carbon metabolism-involved); transcription factor

Coordinates

chrA10:-:7567628..7569275

Molecular Weight (calculated)

43431.7 Da

IEP (calculated)

9.358

GRAVY (calculated)

-0.950

Length

387 amino acids

Sequence
(BLAST)

001: MGSNFHYSID LNEDQDHHEE PFFYPLGSSS SLLHNYQVPS NSSSSSSSIS SLSSYLPFLI NSQDDQHVAC NNTYQYEHFH LSQPLKANMF NGGSSSSSYD
101: RMVPKKETRL KLTIRKKDHH DDQTDFLHHP TKPNSDSDKW MMSPKMRLIK KTITNNKQPT DQANNNNNRN HKEDHYPFNQ KTSFEKDHDE DLKKVTTTAV
201: TTENRYNTIK DNGYGNNNGV IRVCSDCNTT KTPLWRSGPR GPKSLCNACG IRQRKARKAA MAAAVAAGDQ EVVAAQLQQI PAKKKLQSKK KRSNGGDKFN
301: LSPPVMSKTK KCKIKEQEQE DTTTVAGDSE ISKSTTSSDS SISSNKLCFN DLTIMLRKSS AYQQVFPQDE KEAAILLMAL SHGMVHG

Best Arabidopsis Sequence Match ( AT5G56860.1 )
(BLAST)

001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG

Arabidopsis Description

GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.