Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G359900.1 | Wheat | nucleus | 95.29 | 95.82 |
| HORVU7Hr1G086810.1 | Barley | nucleus | 94.46 | 94.72 |
| TraesCS7A01G363100.1 | Wheat | nucleus | 93.35 | 94.66 |
| Zm00001d046354_P001 | Maize | nucleus | 65.93 | 64.32 |
| Os06t0571800-02 | Rice | nucleus | 60.66 | 63.11 |
| EER88552 | Sorghum | nucleus | 65.1 | 60.88 |
| TraesCS6B01G214900.1 | Wheat | cytosol | 47.65 | 50.29 |
| GSMUA_Achr7P09030_001 | Banana | nucleus | 21.61 | 50.0 |
| GSMUA_Achr2P16730_001 | Banana | nucleus | 23.55 | 40.87 |
| VIT_04s0008g01290.t01 | Wine grape | plastid | 30.47 | 35.95 |
| VIT_11s0016g02210.t01 | Wine grape | nucleus, plastid | 29.09 | 33.98 |
| Bra035633.1-P | Field mustard | nucleus | 26.04 | 31.23 |
| Solyc07g038160.2.1 | Tomato | nucleus | 22.44 | 30.45 |
| KRH19153 | Soybean | nucleus | 25.21 | 28.98 |
| KRH02716 | Soybean | nucleus | 25.76 | 28.88 |
| PGSC0003DMT400011449 | Potato | nucleus | 22.71 | 28.67 |
| PGSC0003DMT400000761 | Potato | nucleus | 22.16 | 27.87 |
| AT4G26150.1 | Thale cress | cytosol | 26.87 | 27.56 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 12.74 | 27.54 |
| CDY20709 | Canola | nucleus | 29.36 | 26.9 |
| CDY67979 | Canola | nucleus | 29.09 | 26.79 |
| KRH12382 | Soybean | nucleus | 23.27 | 26.67 |
| Solyc12g008830.1.1 | Tomato | nucleus | 21.61 | 26.62 |
| CDX94365 | Canola | nucleus | 26.32 | 26.39 |
| CDY32755 | Canola | nucleus | 28.25 | 26.36 |
| Bra002788.1-P | Field mustard | nucleus | 28.25 | 26.36 |
| CDX88593 | Canola | nucleus | 25.76 | 26.2 |
| CDY32891 | Canola | nucleus | 27.98 | 26.03 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 10.53 | 26.03 |
| CDY42752 | Canola | nucleus | 26.59 | 25.95 |
| CDY42753 | Canola | nucleus | 26.59 | 25.95 |
| KRH61505 | Soybean | nucleus | 20.78 | 25.68 |
| AT5G56860.1 | Thale cress | nucleus | 28.25 | 25.63 |
| Bra026461.1-P | Field mustard | nucleus | 25.48 | 25.56 |
| CDX89358 | Canola | nucleus | 25.21 | 25.28 |
| CDY67546 | Canola | nucleus | 26.32 | 25.27 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 12.47 | 25.0 |
| Bra019118.1-P | Field mustard | nucleus | 26.59 | 24.74 |
| Bra006851.1-P | Field mustard | nucleus, plastid | 26.32 | 24.74 |
| CDY65439 | Canola | nucleus | 26.32 | 24.74 |
| KRH37384 | Soybean | nucleus | 22.71 | 24.33 |
| KRH05458 | Soybean | nucleus | 19.94 | 23.53 |
| KRH15535 | Soybean | nucleus | 19.67 | 23.2 |
| TraesCS1B01G448200.1 | Wheat | plastid | 11.91 | 19.82 |
| Bra001644.1-P | Field mustard | nucleus | 7.76 | 19.18 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 11.36 | 18.3 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 | ScanProsite:PS00344 |
| PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF287 | SMART:SM00401 | SUPFAM:SSF57716 | EnsemblPlantsGene:TraesCS7B01G264800 |
| EnsemblPlants:TraesCS7B01G264800.1 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | TIGR:cd00202 | SEG:seg | : |
Description
No Description!
Coordinates
chr7B:-:485429696..485431204
Molecular Weight (calculated)
38834.2 Da
IEP (calculated)
8.405
GRAVY (calculated)
-0.389
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTIYMSQLS TAFPLMEEDH HQDHHQGHFQ AFTLPKDPPI LFPFVISNSG PSDNSSTLSY GSDQHLMQHH AMLDQPQHMI GESSSVFSTP FPTVESIRDD
101: MIERSYSYDP YDMEKLQATS GSLKIGKWTA PAPAAKMRIT RKTSDPGVKK PRKRAQAYED HGHMGGMNQA LGVIRTCSDC NTTKTPLWRS GPCGPKSLCN
201: ACGIRQRKAR RAMMATGAAP ATDVGATKAA APGDDAVTVH PPKVKKEKRA ADVDRSLPFK KRCKVVQDHT ATNAAASTTV EAATEPPVVV TTTTTTTAAA
301: AAPARDLVDT IGANWSKSPT VAAAACFRPS PATFAVPVPV QDEITDAAML LMTLSCELVR S
101: MIERSYSYDP YDMEKLQATS GSLKIGKWTA PAPAAKMRIT RKTSDPGVKK PRKRAQAYED HGHMGGMNQA LGVIRTCSDC NTTKTPLWRS GPCGPKSLCN
201: ACGIRQRKAR RAMMATGAAP ATDVGATKAA APGDDAVTVH PPKVKKEKRA ADVDRSLPFK KRCKVVQDHT ATNAAASTTV EAATEPPVVV TTTTTTTAAA
301: AAPARDLVDT IGANWSKSPT VAAAACFRPS PATFAVPVPV QDEITDAAML LMTLSCELVR S
001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG
Arabidopsis Description
GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.