Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56860.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006851.1-P | Field mustard | nucleus, plastid | 99.15 | 91.67 |
| CDY65439 | Canola | nucleus | 97.18 | 89.84 |
| CDY32755 | Canola | nucleus | 80.0 | 73.39 |
| CDY32891 | Canola | nucleus | 79.44 | 72.68 |
| CDY67979 | Canola | nucleus | 79.72 | 72.19 |
| CDY20709 | Canola | nucleus | 79.72 | 71.83 |
| AT5G56860.1 | Thale cress | nucleus | 79.15 | 70.6 |
| CDY42752 | Canola | nucleus | 47.04 | 45.14 |
| CDY42753 | Canola | nucleus | 47.04 | 45.14 |
| CDX94365 | Canola | nucleus | 45.63 | 45.0 |
| CDX89358 | Canola | nucleus | 44.51 | 43.89 |
| CDY67546 | Canola | nucleus | 46.2 | 43.62 |
| CDY25008 | Canola | nucleus | 10.99 | 39.0 |
| CDX87024 | Canola | nucleus | 10.99 | 37.86 |
| CDX86241 | Canola | nucleus | 13.52 | 37.8 |
| CDX85400 | Canola | nucleus | 13.52 | 37.8 |
| KRH19153 | Soybean | nucleus | 33.24 | 37.58 |
| CDY05639 | Canola | nucleus | 13.52 | 36.64 |
| KRH02716 | Soybean | nucleus | 32.96 | 36.34 |
| GSMUA_Achr8P24880_001 | Banana | nucleus | 20.85 | 33.95 |
| KRH12382 | Soybean | nucleus | 29.86 | 33.65 |
| CDY34933 | Canola | nucleus | 13.24 | 33.57 |
| CDY33918 | Canola | nucleus | 13.24 | 33.33 |
| CDY68751 | Canola | cytosol, mitochondrion | 9.3 | 32.67 |
| KRH37384 | Soybean | nucleus | 28.73 | 30.27 |
| CDX92103 | Canola | nucleus | 13.8 | 29.52 |
| CDY34429 | Canola | cytosol | 12.39 | 28.76 |
| CDX90545 | Canola | nucleus | 11.83 | 28.57 |
| CDY34981 | Canola | nucleus | 13.52 | 28.07 |
| CDY52723 | Canola | nucleus | 13.8 | 27.22 |
| TraesCS7A01G363100.1 | Wheat | nucleus | 27.04 | 26.97 |
| CDY32214 | Canola | nucleus | 13.52 | 26.82 |
| TraesCS7D01G359900.1 | Wheat | nucleus | 27.04 | 26.74 |
| HORVU7Hr1G086810.1 | Barley | nucleus | 26.76 | 26.39 |
| CDX95897 | Canola | nucleus | 12.11 | 26.22 |
| CDX82388 | Canola | nucleus | 12.68 | 25.86 |
| CDX80603 | Canola | nucleus | 10.7 | 25.85 |
| TraesCS7B01G264800.1 | Wheat | nucleus | 26.2 | 25.76 |
| Zm00001d046354_P001 | Maize | nucleus | 26.48 | 25.41 |
| CDX75893 | Canola | nucleus | 12.96 | 25.14 |
| EER88552 | Sorghum | nucleus | 27.32 | 25.13 |
| CDY09717 | Canola | nucleus | 12.39 | 24.86 |
| Zm00001d016361_P001 | Maize | nucleus | 25.63 | 24.59 |
| TraesCS6A01G185900.1 | Wheat | cytosol | 23.66 | 24.56 |
| TraesCS6D01G173000.1 | Wheat | cytosol | 23.38 | 24.27 |
| Os02t0220400-01 | Rice | nucleus | 23.94 | 24.08 |
| Os06t0571800-02 | Rice | nucleus | 23.38 | 23.92 |
| HORVU6Hr1G039720.2 | Barley | cytosol | 23.1 | 23.84 |
| TraesCS6B01G214900.1 | Wheat | cytosol | 22.82 | 23.68 |
| CDY69687 | Canola | nucleus | 12.11 | 22.75 |
| KXG29816 | Sorghum | nucleus | 24.79 | 22.74 |
| CDY53079 | Canola | cytosol | 12.96 | 22.22 |
| CDY70754 | Canola | nucleus | 13.52 | 21.52 |
| CDY68627 | Canola | nucleus | 13.24 | 21.17 |
| CDX72587 | Canola | cytosol | 13.52 | 21.15 |
| CDY24779 | Canola | nucleus | 12.68 | 21.13 |
| CDY13040 | Canola | cytosol | 11.83 | 21.11 |
| CDX69237 | Canola | nucleus | 13.24 | 21.08 |
| CDY60289 | Canola | nucleus | 11.83 | 20.79 |
| CDY72649 | Canola | nucleus | 11.55 | 20.5 |
| CDY51221 | Canola | nucleus | 11.27 | 19.9 |
| CDY28986 | Canola | cytosol | 15.21 | 19.71 |
| CDX90680 | Canola | nucleus | 15.21 | 19.42 |
| CDX77958 | Canola | nucleus | 14.37 | 19.17 |
| CDX73777 | Canola | nucleus | 14.65 | 17.93 |
| CDY45238 | Canola | nucleus | 11.27 | 16.95 |
| CDY30768 | Canola | nucleus | 10.7 | 16.67 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078DN00 | EnsemblPlants:CDX88593 | ProteinID:CDX88593 | ProteinID:CDX88593.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00148627001 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF226 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI0004EF155D | InterPro:Znf_GATA |
| InterPro:Znf_NHR/GATA | SEG:seg | : | : | : | : |
Description
BnaA03g10560D
Coordinates
chrLK031856:-:71578..73670
Molecular Weight (calculated)
39772.5 Da
IEP (calculated)
8.721
GRAVY (calculated)
-0.850
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLLHNQVLSN SSCSSSSISS LSSYLPFLIN SQEDQHVEYK NTYHVDHVHL SQPLKAKMFN SGSSSSYDHM
101: TKPNLDSDKW MMSPKMRLIK NTITNNKQST DHTSKNNNDH KEDHHLLNQK ISLEEDHDED LKKISPRTTT AVTRENRDNT INENGYGNYN GLIRVCSNCN
201: TTKTPLWRSG PRGPKSLCNA CGIRQRKARQ AAMAAATAEG DQEVMAARMQ QLPVKKKLQN KKKRSNGGDK YDITPHVGAY TKKCKIKEGD EYAAAVAEIS
301: KSTTSSDSSV SSNKLRFDDL TIMLTKSSAY QQVFPQDEKE AAVLLMALSY GMVHG
101: TKPNLDSDKW MMSPKMRLIK NTITNNKQST DHTSKNNNDH KEDHHLLNQK ISLEEDHDED LKKISPRTTT AVTRENRDNT INENGYGNYN GLIRVCSNCN
201: TTKTPLWRSG PRGPKSLCNA CGIRQRKARQ AAMAAATAEG DQEVMAARMQ QLPVKKKLQN KKKRSNGGDK YDITPHVGAY TKKCKIKEGD EYAAAVAEIS
301: KSTTSSDSSV SSNKLRFDDL TIMLTKSSAY QQVFPQDEKE AAVLLMALSY GMVHG
001: MGSNFHYTID LNEDQNHQPF FASLGSSLHH HLQQQQQQQQ HFHHQASSNP SSLMSPSLSY FPFLINSRQD QVYVGYNNNT FHDVLDTHIS QPLETKNFVS
101: DGGSSSSDQM VPKKETRLKL TIKKKDNHQD QTDLPQSPIK DMTGTNSLKW ISSKVRLMKK KKAIITTSDS SKQHTNNDQS SNLSNSERQN GYNNDCVIRI
201: CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAT ATATAVSGVS PPVMKKKMQN KNKISNGVYK ILSPLPLKVN TCKRMITLEE TALAEDLETQ
301: SNSTMLSSSD NIYFDDLALL LSKSSAYQQV FPQDEKEAAI LLMALSHGMV HG
101: DGGSSSSDQM VPKKETRLKL TIKKKDNHQD QTDLPQSPIK DMTGTNSLKW ISSKVRLMKK KKAIITTSDS SKQHTNNDQS SNLSNSERQN GYNNDCVIRI
201: CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAT ATATAVSGVS PPVMKKKMQN KNKISNGVYK ILSPLPLKVN TCKRMITLEE TALAEDLETQ
301: SNSTMLSSSD NIYFDDLALL LSKSSAYQQV FPQDEKEAAI LLMALSHGMV HG
Arabidopsis Description
GATA22Putative GATA transcription factor 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.