CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69626
CDX70228
CDX70522
CDX77787
CDX78540
CDX84832
CDX85624
CDX88593
CDX89591
CDX91094
CDX97828
CDY02066
CDY05027
CDY10738
CDY11288
CDY17716
CDY20709
CDY21119	nucleus
CDY23997
CDY28914
CDY29672
CDY30008	nucleus
CDY32755
CDY32891
CDY40550
CDY42128
CDY44852
CDY58436
CDY61764
CDY65439
CDY67979
CDY68172
CDY71034

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01320.1	CDX84832	AT2G30470.1	19962994
AT3G01320.1	CDX97828	AT2G30470.1	19962994
AT3G01320.1	CDY02066	AT2G30470.1	19962994
AT3G01320.1	CDY10738	AT2G30470.1	19962994
AT3G01320.1	CDY23997	AT2G30470.1	19962994
AT3G01320.1	CDY29672	AT2G30470.1	19962994
AT3G01320.1	CDY21119	AT4G38130.1	23371947
AT3G01320.1	CDY30008	AT4G38130.1	23371947
AT3G01320.1	CDY21119	AT4G38130.1	23371947
AT3G01320.1	CDY30008	AT4G38130.1	23371947
AT3G01320.1	CDX70228	AT5G04390.1	19962994
AT3G01320.1	CDX89591	AT5G04390.1	19962994
AT3G01320.1	CDY05027	AT5G04390.1	19962994
AT3G01320.1	CDY11288	AT5G04390.1	19962994
AT3G01320.1	CDY42128	AT5G04390.1	19962994
AT3G01320.1	CDY44852	AT5G04390.1	19962994
AT3G01320.1	CDY58436	AT5G04390.1	19962994
AT3G01320.1	CDY61764	AT5G04390.1	19962994
AT3G01320.1	CDY71034	AT5G04390.1	19962994
AT3G01320.1	CDX69626	AT5G13820.1	19962994
AT3G01320.1	CDX70522	AT5G13820.1	19962994
AT3G01320.1	CDX78540	AT5G13820.1	19962994
AT3G01320.1	CDX85624	AT5G13820.1	19962994
AT3G01320.1	CDX91094	AT5G13820.1	19962994
AT3G01320.1	CDY68172	AT5G13820.1	19962994
AT3G01320.1	CDX77787	AT5G47660.1	19962994
AT3G01320.1	CDY17716	AT5G47660.1	19962994
AT3G01320.1	CDY28914	AT5G47660.1	19962994
AT3G01320.1	CDY40550	AT5G47660.1	19962994
AT3G01320.1	CDX88593	AT5G56860.1	19962994
AT3G01320.1	CDY20709	AT5G56860.1	19962994
AT3G01320.1	CDY32755	AT5G56860.1	19962994
AT3G01320.1	CDY32891	AT5G56860.1	19962994
AT3G01320.1	CDY65439	AT5G56860.1	19962994
AT3G01320.1	CDY67979	AT5G56860.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040510.1-P	Field mustard	mitochondrion, nucleus	98.51	98.59
CDY28682	Canola	nucleus	83.95	91.2
AT3G01320.1	Thale cress	mitochondrion, nucleus	79.79	78.28
CDX78604	Canola	nucleus	68.42	68.22
CDX70587	Canola	nucleus	68.42	67.97
CDY64434	Canola	nucleus	3.12	67.74
CDX85568	Canola	nucleus	66.94	67.44
CDX91007	Canola	nucleus	65.75	66.89
KRH18559	Soybean	nucleus	21.4	61.28
CDY23529	Canola	cytosol	6.84	58.23
CDY48380	Canola	cytosol	6.76	57.59
KRG93437	Soybean	nucleus	57.58	55.28
Solyc02g087370.1.1	Tomato	cytosol	7.88	55.21
VIT_14s0066g02330.t01	Wine grape	nucleus	56.31	54.73
CDY70453	Canola	cytosol	13.37	53.73
KRH18561	Soybean	nucleus	35.36	52.77
Solyc02g067570.2.1	Tomato	nucleus	52.45	52.37
CDY71516	Canola	cytosol, mitochondrion, nucleus	10.03	51.92
Solyc02g087380.1.1	Tomato	nucleus, plastid	5.27	51.82
Solyc02g087360.2.1	Tomato	nucleus	51.71	51.82
CDY31594	Canola	nucleus	15.16	51.39
PGSC0003DMT400003538	Potato	nucleus	51.26	50.85
CDY55066	Canola	cytosol	15.01	50.75
CDY06480	Canola	cytosol	8.84	50.42
CDY23528	Canola	cytosol	5.57	48.39
CDY48381	Canola	cytosol	5.57	48.39
CDY08302	Canola	cytosol	9.14	48.05
CDY14679	Canola	cytosol, mitochondrion, nucleus	3.19	47.78
CDY16234	Canola	cytosol, mitochondrion, nucleus	3.19	47.78
CDY30912	Canola	nucleus	36.7	47.05
CDY37976	Canola	nucleus	34.18	46.56
CDY08301	Canola	cytosol	9.58	46.4
CDY67989	Canola	nucleus	5.35	46.15
CDY40291	Canola	cytoskeleton, cytosol, nucleus	2.9	45.35
CDX68358	Canola	nucleus	43.02	45.09
CDX93425	Canola	nucleus	34.03	45.08
CDY11625	Canola	nucleus	43.02	44.88
CDY23527	Canola	nucleus	43.09	44.82
CDY38781	Canola	nucleus	42.87	44.76
CDY24499	Canola	nucleus	36.85	44.73
CDY28457	Canola	cytoskeleton, cytosol, nucleus	2.75	44.05
CDY45153	Canola	nucleus	31.13	43.29
CDY33612	Canola	nucleus	36.63	42.76
CDY31595	Canola	nucleus	21.1	41.04
CDY55065	Canola	nucleus	21.03	40.49
CDY66875	Canola	mitochondrion	4.75	40.0
CDY42981	Canola	mitochondrion	4.75	40.0
CDY03764	Canola	cytosol	4.68	38.89
CDY42984	Canola	cytosol, mitochondrion, nucleus	4.61	38.75
PGSC0003DMT400003545	Potato	cytosol, mitochondrion	14.71	38.67
CDY42979	Canola	cytosol, mitochondrion, nucleus	4.09	37.93
Solyc02g087390.1.1	Tomato	cytosol	13.82	36.54
CDY42983	Canola	nucleus	3.94	32.72
CDY64433	Canola	cytosol	6.24	31.7
CDY03763	Canola	cytosol	5.87	27.72
CDY42986	Canola	cytosol	3.71	23.92
CDY16235	Canola	mitochondrion	4.75	19.05
CDY14678	Canola	cytosol	4.68	18.21

Protein Annotations

Gene3D:1.20.1160.11	MapMan:12.3.2.4.2	GO:A0A078GVJ9	UniProt:A0A078GVJ9	EnsemblPlants:CDY28683	ProteinID:CDY28683
ProteinID:CDY28683.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045892	EnsemblPlantsGene:GSBRNA2T00041310001	InterPro:HDAC_interact_dom	InterPro:IPR003822	InterPro:PAH	InterPro:PAH_sf
PFAM:PF02671	PFAM:PF08295	PFAM:PF16879	PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF21
SMART:SM00761	SUPFAM:SSF47762	InterPro:Sin3_C	UniParc:UPI0004EDF41C	SEG:seg	:

Description

BnaCnng05690DPaired amphipathic helix protein Sin3-like 1 [Source:Projected from Arabidopsis thaliana (AT3G01320) UniProtKB/Swiss-Prot;Acc:Q9SRH9]

Coordinates

chrLK032225:-:206500..213146

Molecular Weight (calculated)

153479.0 Da

IEP (calculated)

5.424

GRAVY (calculated)

-0.802

Length

1346 amino acids

Sequence
(BLAST)

0001: MKRIRDGSGS QFRRTLGSSR GELYGQSPVP GSGDTEEEGR GEGGRIASGD VTSQNVKDAL SYLQDVKDMF HDQRETYDRF LEVMKDFKAL RIDTRGVIAR
0101: VKELFKGHNH LIYGFNTFLP KGFEITLIEE DEAPPKKTVD FEEAINFVNK IKTRFKHDEH VYKSFLGILN LYRKEKKGIS EVYNEVSILF EGHSDLLEEF
0201: TRFLPASLPS HSAAQHSRSQ AQRYNDPRSG PPLIRQMQVE KEHRRERAVA SRSDYNADHN DLCDDKTMVK MQREQRKRAD KENRERRGRV LDDREADQDN
0301: LHHFPEIRKS SRRAECPEAY SGSASHSEKD NLKSMYNQAF VFCEKVKERL CSHDDYQTFL KCLNLFSNGI IQTKELQNMV SDLLGKYPDL MDEFSQFFER
0401: CESIDGFQHL AGAMSKKSFS SEEQASRSME VEEKEREHKP DLEVVNETEQ YKEEYVGKSI QELDLSNCEC CTPSYRLLPS DYPVRTASQR SELGAEVLND
0501: RWVSVTSGSE DYSFKHMRRN PYEEILFRCE EERFELDMLL ESVSSAARTA ENLLNIITEK KIAFSGSFRI EDHFTALNLR CIERLYGEHG LDVIDILHKN
0601: PATALPVILT RLKQKQDEWK KCRDDFDKIW AKVYAKNHYK SLDHRSFYFK QQDSKNSSAK SLVAEIKELK EKSQNEDDIL LSISAGYRQP INPNLDYEYF
0701: SRDMHEDLYK LVHFSCEELC STKEQLSKVL RLWENFLEPV LGVPPRAKGT DPVEDVPKTL DVNHSTSTNE EANGSCGADT ATLASRKLIS VANGDQNASS
0801: GASNLGEIGL LNKDSTGKDD LQDADTANGD GVTSSAVKLQ KKHKTGNRAD QRSVMPTPMD INERASTSNL STPSGENNHG VLEKEDLAGS HEIQAKPSNT
0901: LSDIHHIKTS PSTQAGDGGK SIALASGIRS DSSTDNMNSD EPECPLTIEK EEGELSPNGD FDDNVGLHED LGVKSTSKPE NLADAEVENE DENSENASEG
1001: GEECSHDESR EEESGEHEEV DSQSLAGDTE LLRQSERVLL SARPLSKHVA AVLRDWRTKD IRVFYGNDDF YVLFRLHQIL YERILSAKRN CSGDELKSKN
1101: SKDTDSLDPY ARFMKGLYGL LDGSVENTKF EDECRAIFGN QSYVLFTLNK VIYKLVKQLQ AVVADEMDNK LIQLYEYEKS RKPGRVIDSV YYENARVLLH
1201: DENVYRLECS SSPSRLSIQL MDNIVEKPEP YAVSMDPMFA SYLQTEFLST SREKKEEGHN IVLRRNRRPY SGLDDLAALC KAMEGVEVVN GLECKMSCSS
1301: YKVSYVLDTE DFFHRKKKKK KKIEHISQQR NKDRVERFHR FLSASR

Best Arabidopsis Sequence Match ( AT3G01320.1 )
(BLAST)

0001: MKRIRDDVYA SGSQFRRPLG SSRGQLCGQS PVHGSGDTEE EEEGGSRRVS QKLTTNDALS YLREVKEMFQ DQREKYDRFL EVMKDFKAQR TDTGGVIARV
0101: KELFKGHNNL IYGFNTFLPK GYEITLIEED DALPKKTVEF EQAINFVNKI KMRFKHDEHV YKSFLEILNM YRKENKEIKE VYNEVSILFQ GHLDLLEQFT
0201: RFLPASLPSH SAAQHSRSQA QQYSDRGSDP PLLHQMQVEK ERRRERAVAL RGDYSVERYD LNDDKTMVKI QREQRKRLDK ENRARRGRDL DDREAGQDNL
0301: HHFPEKRKSS RRAEALEAYS GSASHSEKDN LKSMYKQAFV FCEKVKDRLC SQDDYQTFLK CLNIFSNGII QRKDLQNLVS DLLGKFPDLM DEFNQFFERC
0401: ESITDGFQRL AGVMSKKLFS SEEQLSRPMK VEEKESEHKP ELEAVKETEQ CKKEYMGKSI QELDLSDCEC CTPSYRLLPA DYPIPIASQR SELGAEVLND
0501: HWVSVTSGSE DYSFKHMRRN QYEESLFRCE DDRFELDMLL ESVSSAARSA ESLLNIITEK KISFSGSFRI EDHFTALNLR CIERLYGDHG LDVIDILNKN
0601: PATALPVILT RLKQKQGEWK KCRDDFDKVW ANVYAKNHYK SLDHRSFYFK QQDSKNLSAK SLLAEIKELK EKSQNDDDVL LSISAGYRQP INPNLEYEYL
0701: NRAIHEDMFK VVQFSCEELC STKEQLSKVL RLWENFLEAV LGVPPRAKGT DLVEDVVINP KTLDVNHSTS PNGEAAVSSG GDTARLASRK LKSAANGDEN
0801: SSSGTFKHGI GLLNKDSTGK ENLEDVEIAN RDGVACSAVK PQKEQETGNE AEKRFGKPIP MDISERAAIS SISIPSGAEN NHCVVGKEVL PGAHEIQAKP
0901: SDTLTDIHHD VDSIETVHST QGGDVGNSIV LANGLRSDSS KGTRNSDDPE GPSRNEKEEG ELSPNGDFED NFGVYKDHGV KSTSKPENSA EAEVEADAEV
1001: ENEDDADDVD SENASEASGT ESGGDVCSQD EDREEENGEH DEIDGKAESE GEAEGMDPHL LEGESELLPQ SERVLLSVRP LSKHVAAVLC DERTKDLQVF
1101: YGNDDFYVLF RLHQILYERI LYAKRNCSGG ELKSKNLKDT NAGDPYARFM RVLYGLLDGS AENTKFEDEC RAIIGNQSYV LFTLDKLIYR LVKQLQAIVA
1201: DEMDNKLLQL YEYEKSRKPG RVIDSVYYEN VRVLVHEENI YRLECSSLPS RLSIQLMDNI IEKPEAYAVS MDPTFASYMQ TELLSVSSGK KEEGHDIVLQ
1301: RNLTGLYDLC KAMEGVEVVN GLECKMSCSS YKIAYVLDTE DYFHRKKKKK KTEQLWQRNK VRVERFHRFL SA

Arabidopsis Description

SNL1Paired amphipathic helix protein Sin3-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.