Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04390.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70228 | Canola | nucleus | 95.69 | 95.99 |
| CDY11288 | Canola | nucleus | 79.08 | 78.12 |
| CDY71034 | Canola | nucleus | 58.15 | 77.14 |
| CDY58436 | Canola | nucleus | 79.08 | 75.59 |
| CDY61764 | Canola | nucleus | 78.46 | 75.0 |
| AT5G04390.1 | Thale cress | nucleus | 81.85 | 73.48 |
| CDY41350 | Canola | nucleus, plastid | 51.08 | 65.87 |
| CDY08602 | Canola | nucleus | 68.0 | 65.38 |
| CDY00945 | Canola | nucleus | 67.69 | 65.09 |
| CDX89591 | Canola | nucleus | 40.92 | 63.94 |
| CDY42128 | Canola | nucleus | 42.46 | 61.88 |
| CDY05027 | Canola | nucleus | 25.85 | 50.3 |
| CDY11027 | Canola | nucleus | 32.62 | 45.89 |
| HORVU4Hr1G082500.1 | Barley | nucleus | 9.23 | 43.48 |
| HORVU5Hr1G095320.1 | Barley | nucleus | 9.23 | 43.48 |
| HORVU3Hr1G057300.1 | Barley | nucleus | 9.23 | 43.48 |
| VIT_08s0007g04770.t01 | Wine grape | nucleus | 36.31 | 42.75 |
| CDY70037 | Canola | nucleus | 32.92 | 42.46 |
| CDY30501 | Canola | nucleus | 32.62 | 42.4 |
| CDY04544 | Canola | nucleus | 32.92 | 41.8 |
| KRH67769 | Soybean | nucleus | 27.69 | 41.67 |
| CDX71375 | Canola | nucleus | 32.62 | 41.57 |
| CDY11255 | Canola | nucleus | 32.31 | 41.34 |
| CDX70302 | Canola | nucleus | 33.23 | 40.75 |
| CDY04886 | Canola | nucleus | 33.54 | 40.67 |
| HORVU1Hr1G012760.1 | Barley | nucleus | 8.62 | 40.58 |
| CDX80870 | Canola | nucleus | 31.69 | 40.55 |
| CDY10376 | Canola | nucleus | 32.92 | 40.38 |
| HORVU2Hr1G122100.1 | Barley | nucleus, plastid | 9.54 | 40.26 |
| CDY44371 | Canola | nucleus | 32.62 | 39.55 |
| HORVU1Hr1G020710.1 | Barley | nucleus | 9.23 | 38.96 |
| GSMUA_Achr1P03310_001 | Banana | nucleus | 20.0 | 38.92 |
| PGSC0003DMT400009871 | Potato | nucleus | 34.77 | 37.92 |
| CDY31725 | Canola | nucleus | 17.23 | 37.84 |
| CDX77198 | Canola | nucleus | 17.23 | 37.84 |
| HORVU5Hr1G095330.1 | Barley | nucleus | 8.92 | 37.66 |
| HORVU5Hr1G095390.1 | Barley | nucleus | 8.92 | 37.66 |
| CDY15775 | Canola | nucleus | 17.23 | 37.33 |
| CDY04582 | Canola | nucleus | 17.23 | 37.33 |
| CDX91362 | Canola | nucleus | 20.0 | 36.11 |
| CDX74961 | Canola | nucleus | 20.0 | 36.11 |
| KRH32562 | Soybean | nucleus | 32.92 | 35.91 |
| Solyc09g008440.1.1 | Tomato | nucleus | 34.15 | 35.81 |
| KRH19960 | Soybean | nucleus | 31.69 | 35.76 |
| CDX93380 | Canola | nucleus | 19.69 | 35.75 |
| CDY07578 | Canola | nucleus | 18.15 | 35.12 |
| CDY52747 | Canola | nucleus | 18.15 | 35.12 |
| CDY18446 | Canola | nucleus | 19.38 | 35.0 |
| Zm00001d036330_P001 | Maize | nucleus | 26.46 | 34.96 |
| CDY65670 | Canola | nucleus | 19.08 | 34.64 |
| CDY65692 | Canola | nucleus | 16.92 | 34.38 |
| CDY31593 | Canola | nucleus | 16.92 | 34.38 |
| CDY07790 | Canola | nucleus | 19.08 | 34.25 |
| CDX71073 | Canola | nucleus | 16.62 | 34.18 |
| CDX80226 | Canola | nucleus | 16.92 | 34.16 |
| CDX88724 | Canola | nucleus | 16.62 | 33.96 |
| CDX76199 | Canola | nucleus | 18.15 | 33.91 |
| CDY09252 | Canola | nucleus | 16.31 | 33.76 |
| CDY30857 | Canola | nucleus | 17.23 | 33.53 |
| KXG20985 | Sorghum | nucleus, plastid | 27.69 | 32.73 |
| KRG96047 | Soybean | mitochondrion | 33.54 | 30.19 |
| CDY30924 | Canola | nucleus | 15.69 | 30.0 |
| CDX68366 | Canola | nucleus | 16.0 | 29.38 |
| Zm00001d004439_P001 | Maize | nucleus | 32.31 | 29.25 |
| CDY58688 | Canola | nucleus | 8.0 | 29.21 |
| Zm00001d051865_P001 | Maize | nucleus | 28.92 | 28.48 |
| Os04t0162500-01 | Rice | vacuole | 25.23 | 28.37 |
| TraesCS6A01G404600.1 | Wheat | nucleus | 32.0 | 28.34 |
| HORVU6Hr1G092750.1 | Barley | nucleus | 31.08 | 27.98 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 31.38 | 27.95 |
| Os02t0823900-00 | Rice | cytosol, nucleus, peroxisome | 29.54 | 27.91 |
| TraesCS6D01G387900.1 | Wheat | nucleus | 31.38 | 27.87 |
| CDX99130 | Canola | nucleus | 16.31 | 27.6 |
| Zm00001d024866_P001 | Maize | nucleus | 31.08 | 27.6 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 28.92 | 27.49 |
| CDY30925 | Canola | nucleus | 14.15 | 27.22 |
| CDX86044 | Canola | nucleus | 16.31 | 25.98 |
| EES10410 | Sorghum | nucleus | 32.0 | 25.94 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 28.31 | 25.21 |
| EES07783 | Sorghum | nucleus | 29.54 | 24.55 |
Protein Annotations
| EnsemblPlants:CDY44852 | EnsemblPlantsGene:GSBRNA2T00080902001 | Gene3D:3.30.160.60 | GO:A0A078I460 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF325 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDY44852 | ProteinID:CDY44852.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EEBC76 | UniProt:A0A078I460 | MapMan:15.5.15 | : |
Description
BnaC09g50520DBnaC09g50520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I460]
Coordinates
chrLK032604:+:43524..44564
Molecular Weight (calculated)
35524.4 Da
IEP (calculated)
7.371
GRAVY (calculated)
-0.618
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAFEEAIAA SKEQSLIFKG KRTKRQRPQS PIPFSIISPP IVSSHAHDIQ EESKKDGVIT SSSSSASWSS NNNATLKAEE DEEEQEIANC LILLSQGHSL
101: PLPNHEANNN NTYRFSSRRF LETSSSNGGD KAGYYVYQCK TCDRTFPSFQ ALGGHRASHK KPKATLSSYS NIDNNNNRSL AVYGKAGSNK VHECGVCGAE
201: FTSGQALGGH MRRHRGAVVI AAAPVTTVTV ATAAANTELS LSSMSFDQIS DGQDHLVMPA TKRAKKTVVS LDLDLNLPAP EDENRVNGFT FALKQKQEQE
301: HQPTMQREEP KCLHMSAPTL VDCHY
101: PLPNHEANNN NTYRFSSRRF LETSSSNGGD KAGYYVYQCK TCDRTFPSFQ ALGGHRASHK KPKATLSSYS NIDNNNNRSL AVYGKAGSNK VHECGVCGAE
201: FTSGQALGGH MRRHRGAVVI AAAPVTTVTV ATAAANTELS LSSMSFDQIS DGQDHLVMPA TKRAKKTVVS LDLDLNLPAP EDENRVNGFT FALKQKQEQE
301: HQPTMQREEP KCLHMSAPTL VDCHY
001: MEAFEEATKE QSLILKGKRT KRQRPQSPIP FSISPPIVST PENNMEEEYT DLDSKDNALG NDEGNHKKDG VITSSSSSAS WSSQNNHTLK AAEDEEDQDI
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84K31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.