Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018225.1-P | Field mustard | nucleus | 96.35 | 96.35 |
| CDX86044 | Canola | nucleus | 93.75 | 88.24 |
| CDY30924 | Canola | nucleus | 61.46 | 69.41 |
| CDX68366 | Canola | nucleus | 63.02 | 68.36 |
| CDY58688 | Canola | nucleus | 30.21 | 65.17 |
| AT3G46070.1 | Thale cress | nucleus | 56.77 | 64.12 |
| CDY30925 | Canola | nucleus | 56.25 | 63.91 |
| CDY65692 | Canola | nucleus | 53.12 | 63.75 |
| CDX88724 | Canola | nucleus | 52.6 | 63.52 |
| CDX71073 | Canola | nucleus | 51.56 | 62.66 |
| CDY31593 | Canola | nucleus | 52.08 | 62.5 |
| CDX80226 | Canola | nucleus | 51.56 | 61.49 |
| CDY09252 | Canola | nucleus | 50.0 | 61.15 |
| CDX77198 | Canola | nucleus | 33.85 | 43.92 |
| CDY31725 | Canola | nucleus | 33.85 | 43.92 |
| CDY04582 | Canola | nucleus | 33.85 | 43.33 |
| CDY15775 | Canola | nucleus | 33.85 | 43.33 |
| Solyc06g075780.1.1 | Tomato | nucleus | 33.33 | 41.56 |
| PGSC0003DMT400077934 | Potato | cytosol, nucleus, plastid | 33.85 | 39.63 |
| KRH24840 | Soybean | nucleus | 31.77 | 39.1 |
| KRH23029 | Soybean | nucleus | 34.38 | 38.6 |
| PGSC0003DMT400040143 | Potato | nucleus | 33.33 | 38.55 |
| Solyc11g073060.1.1 | Tomato | nucleus | 30.73 | 38.31 |
| KRH29844 | Soybean | nucleus, plastid | 28.65 | 38.19 |
| PGSC0003DMT400040144 | Potato | nucleus | 32.81 | 38.18 |
| KRH10294 | Soybean | nucleus | 33.85 | 37.79 |
| PGSC0003DMT400040142 | Potato | nucleus | 32.29 | 37.58 |
| PGSC0003DMT400040207 | Potato | nucleus | 31.77 | 37.2 |
| PGSC0003DMT400040141 | Potato | nucleus | 32.81 | 37.06 |
| PGSC0003DMT400040206 | Potato | nucleus | 32.81 | 36.84 |
| CDX93380 | Canola | nucleus | 33.85 | 36.31 |
| CDY18446 | Canola | nucleus | 33.33 | 35.56 |
| CDX91362 | Canola | nucleus | 32.81 | 35.0 |
| CDX74961 | Canola | nucleus | 31.77 | 33.89 |
| CDY65670 | Canola | nucleus | 30.21 | 32.4 |
| CDY07790 | Canola | nucleus | 30.21 | 32.04 |
| CDY30857 | Canola | nucleus | 27.6 | 31.74 |
| CDY52747 | Canola | nucleus | 27.6 | 31.55 |
| CDY07578 | Canola | nucleus | 27.6 | 31.55 |
| CDX76199 | Canola | nucleus | 26.56 | 29.31 |
| CDY11027 | Canola | nucleus | 27.6 | 22.94 |
| CDY71034 | Canola | nucleus | 28.12 | 22.04 |
| CDY30501 | Canola | nucleus | 28.65 | 22.0 |
| CDY70037 | Canola | nucleus | 28.65 | 21.83 |
| CDX80870 | Canola | nucleus | 28.65 | 21.65 |
| CDY11255 | Canola | nucleus | 28.65 | 21.65 |
| CDY04544 | Canola | nucleus | 28.65 | 21.48 |
| CDY41350 | Canola | nucleus, plastid | 28.12 | 21.43 |
| CDX71375 | Canola | nucleus | 28.12 | 21.18 |
| CDY44371 | Canola | nucleus | 28.65 | 20.52 |
| CDY04886 | Canola | nucleus | 28.65 | 20.52 |
| CDY10376 | Canola | nucleus | 28.12 | 20.38 |
| CDX70302 | Canola | nucleus | 27.6 | 20.0 |
| CDY11288 | Canola | nucleus | 30.73 | 17.93 |
| CDY00945 | Canola | nucleus | 30.73 | 17.46 |
| CDY08602 | Canola | nucleus | 30.73 | 17.46 |
| CDY58436 | Canola | nucleus | 30.73 | 17.35 |
| CDY61764 | Canola | nucleus | 29.69 | 16.76 |
| CDX70228 | Canola | nucleus | 28.12 | 16.67 |
| CDY44852 | Canola | nucleus | 27.6 | 16.31 |
| CDX89591 | Canola | nucleus | 17.19 | 15.87 |
| CDY05027 | Canola | nucleus | 13.02 | 14.97 |
| CDY42128 | Canola | nucleus | 15.62 | 13.45 |
Protein Annotations
| EnsemblPlants:CDX99130 | EnsemblPlantsGene:GSBRNA2T00107287001 | Gene3D:3.30.160.60 | GO:A0A078EAK8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDX99130 | ProteinID:CDX99130.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EEB4F8 | MapMan:15.5.15 | : | : |
Description
BnaA06g18210D
Coordinates
chrLK031908:+:590970..591548
Molecular Weight (calculated)
20753.5 Da
IEP (calculated)
9.105
GRAVY (calculated)
-0.627
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MVARSEKLDR TVEGTAGNNE KLERTVEDKA ANCLMLLSRI GENGGGGRES RVYRCKTCMK EFSSFQSLGG HRASHNKHVN NSSSDEQSSL SSGSIAKPKR
101: KTTNTTRSHP CPICGVEFPI GQALGGHMRK HRNEEEASGA LVARPFFPEA ATSMITTLKK SSSGKRVACF DLGPDSVESS INLNLELGSS MY
101: KTTNTTRSHP CPICGVEFPI GQALGGHMRK HRNEEEASGA LVARPFFPEA ATSMITTLKK SSSGKRVACF DLGPDSVESS INLNLELGSS MY
001: MVARSEEVEI VEDTAAKCLM LLSRVGECGG GGEKRVFRCK TCLKEFSSFQ ALGGHRASHK KLINSSDPSL LGSLSNKKTK TATSHPCPIC GVEFPMGQAL
101: GGHMRRHRSE KASPGTLVTR SFLPETTTVT TLKKSSSGKR VACLDLDSME SLVNWKLELG RTIS
101: GGHMRRHRSE KASPGTLVTR SFLPETTTVT TLKKSSSGKR VACLDLDSME SLVNWKLELG RTIS
Arabidopsis Description
ZAT8Zinc finger protein ZAT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX85]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.