Factsheet for Bra018225.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99130	Canola	nucleus	96.35	96.35
Bra019477.1-P	Field mustard	nucleus	63.02	71.18
Bra019476.1-P	Field mustard	nucleus	57.81	65.68
AT3G46070.1	Thale cress	nucleus	57.29	64.71
Bra006691.1-P	Field mustard	nucleus	52.08	62.89
Bra006692.1-P	Field mustard	nucleus	52.08	62.89
Bra020284.1-P	Field mustard	nucleus	36.46	62.5
Bra002528.1-P	Field mustard	nucleus	51.04	61.25
Bra035678.1-P	Field mustard	nucleus	33.85	43.92
Bra011931.1-P	Field mustard	cytosol	33.85	43.33
Solyc06g075780.1.1	Tomato	nucleus	33.33	41.56
PGSC0003DMT400077934	Potato	cytosol, nucleus, plastid	33.85	39.63
KRH24840	Soybean	nucleus	31.77	39.1
PGSC0003DMT400040143	Potato	nucleus	33.33	38.55
Solyc11g073060.1.1	Tomato	nucleus	30.73	38.31
KRH29844	Soybean	nucleus, plastid	28.65	38.19
PGSC0003DMT400040144	Potato	nucleus	32.81	38.18
KRH23029	Soybean	nucleus	33.85	38.01
PGSC0003DMT400040142	Potato	nucleus	32.29	37.58
KRH10294	Soybean	nucleus	33.33	37.21
PGSC0003DMT400040207	Potato	nucleus	31.77	37.2
PGSC0003DMT400040141	Potato	nucleus	32.81	37.06
PGSC0003DMT400040206	Potato	nucleus	32.81	36.84
Bra017188.1-P	Field mustard	nucleus	33.33	35.56
Bra005197.1-P	Field mustard	nucleus	30.21	34.73
Bra030981.1-P	Field mustard	nucleus	30.21	32.04
Bra003148.1-P	Field mustard	nucleus	27.6	31.55
Bra039806.1-P	Field mustard	nucleus	27.08	29.89
Bra005766.1-P	Field mustard	nucleus	29.69	20.65
Bra028831.1-P	Field mustard	nucleus	28.65	20.52
Bra009525.1-P	Field mustard	nucleus	28.12	20.38
Bra011970.1-P	Field mustard	nucleus	29.69	19.79
Bra034116.1-P	Field mustard	plastid	28.12	19.42
Bra034396.1-P	Field mustard	nucleus	28.65	18.84
Bra029843.1-P	Field mustard	nucleus	29.17	17.23
Bra028791.1-P	Field mustard	nucleus	30.21	16.48
Bra005803.1-P	Field mustard	nucleus	30.73	16.43
Bra009457.1-P	Field mustard	nucleus	28.12	15.65

Protein Annotations

EnsemblPlants:Bra018225.1	EnsemblPlants:Bra018225.1-P	EnsemblPlantsGene:Bra018225	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF318
PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI000253F55E	UniProt:M4DNY7	MapMan:15.5.15	:	:	:

Description

AT3G46070 (E=3e-045) | zinc finger (C2H2 type) family protein

Coordinates

chrA06:+:11254047..11254625

Molecular Weight (calculated)

20883.6 Da

IEP (calculated)

8.849

GRAVY (calculated)

-0.625

Length

192 amino acids

Sequence
(BLAST)

001: MVARSENLDR TVEGTAGNNE KLERTVEDKA ANCLMLLSRI GENGGGGRES RVYRCKTCMK EFSSFQSLGG HRASHNKHVD NSSSDEQSSL FSGSIAKTKR
101: KTTNTTRSHR CPICGVEFPI GQALGGHMRK HRNEEEASGA LVTRSFFPEA ATSMITTLKK SSSGKRVACF DLGPDSVESS INLNLELGSS MY

Best Arabidopsis Sequence Match ( AT3G46080.1 )
(BLAST)

001: MVARSEEVEI VEDTAAKCLM LLSRVGECGG GGEKRVFRCK TCLKEFSSFQ ALGGHRASHK KLINSSDPSL LGSLSNKKTK TATSHPCPIC GVEFPMGQAL
101: GGHMRRHRSE KASPGTLVTR SFLPETTTVT TLKKSSSGKR VACLDLDSME SLVNWKLELG RTIS

Arabidopsis Description

ZAT8Zinc finger protein ZAT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.