Factsheet for Bra003148.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52747	Canola	nucleus	100.0	100.0
CDY07578	Canola	nucleus	95.24	95.24
AT3G53600.1	Thale cress	nucleus	79.76	76.57
Bra039806.1-P	Field mustard	nucleus	73.81	71.26
Bra030981.1-P	Field mustard	nucleus	53.57	49.72
Bra017188.1-P	Field mustard	nucleus	52.98	49.44
KRG95848	Soybean	nucleus	49.4	48.54
KRH32333	Soybean	nucleus	47.02	48.17
KRH19739	Soybean	cytosol, nucleus	45.24	47.8
KRH67564	Soybean	nucleus	48.81	47.4
Bra005197.1-P	Field mustard	nucleus	45.83	46.11
KRH67565	Soybean	cytosol, nucleus, plastid	43.45	45.91
KRH32335	Soybean	nucleus	48.21	45.25
KRH19741	Soybean	nucleus	46.43	44.32
KRH67566	Soybean	nucleus	41.67	44.3
KRH19742	Soybean	nucleus	47.62	43.96
KRG95850	Soybean	nucleus	39.88	43.23
Bra020284.1-P	Field mustard	nucleus	27.38	41.07
KRH32334	Soybean	nucleus	43.45	40.33
Bra011931.1-P	Field mustard	cytosol	35.12	39.33
Bra035678.1-P	Field mustard	nucleus	34.52	39.19
Bra006691.1-P	Field mustard	nucleus	34.52	36.48
Bra006692.1-P	Field mustard	nucleus	34.52	36.48
GSMUA_Achr8P02630_001	Banana	nucleus	21.43	36.0
Bra002528.1-P	Field mustard	nucleus	33.33	35.0
GSMUA_Achr6P34280_001	Banana	cytosol, mitochondrion, nucleus	22.02	33.64
Bra019477.1-P	Field mustard	nucleus	33.33	32.94
Bra019476.1-P	Field mustard	nucleus	30.95	30.77
Bra018225.1-P	Field mustard	nucleus	31.55	27.6
Bra034396.1-P	Field mustard	nucleus	38.69	22.26
Bra011970.1-P	Field mustard	nucleus	38.1	22.22
Bra028831.1-P	Field mustard	nucleus	35.12	22.01
Bra009525.1-P	Field mustard	nucleus	34.52	21.89
Bra034116.1-P	Field mustard	plastid	35.12	21.22
Bra005766.1-P	Field mustard	nucleus	34.52	21.01
Bra029843.1-P	Field mustard	nucleus	35.12	18.15
Bra009457.1-P	Field mustard	nucleus	35.71	17.39
Bra028791.1-P	Field mustard	nucleus	35.12	16.76
Bra005803.1-P	Field mustard	nucleus	35.71	16.71

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EnsemblPlantsGene:Bra003148	EnsemblPlants:Bra003148.1	EnsemblPlants:Bra003148.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	UniProt:M4CG16	PFAM:PF13912	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF198	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00025413BC
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	:	:	:	:

Description

AT3G53600 (E=8e-069) | zinc finger (C2H2 type) family protein

Coordinates

chrA07:+:11582403..11582909

Molecular Weight (calculated)

19282.0 Da

IEP (calculated)

9.055

GRAVY (calculated)

-0.702

Length

168 amino acids

Sequence
(BLAST)

001: MKRDRSDYEE SITDLDIVKS LMMLSQSFVV KQIEVQQSTR SRTNDNQFEC KTCNRKFDSF QALGGHRASH KKPKLSIDQE QVKHRYNENA AHKCSICGQM
101: FGTGQALGGH MRKHRESMRT EQPVVSSTVY PVLNRCNTSK CLDLNLTPLE NDLVYVFGKN LADFKFVN

Best Arabidopsis Sequence Match ( AT3G53600.1 )
(BLAST)

001: MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN

Arabidopsis Description

At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.