Factsheet for Bra006692.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006691.1-P	Field mustard	nucleus	100.0	100.0
CDX88724	Canola	nucleus	100.0	100.0
AT5G59820.1	Thale cress	nucleus	87.42	85.8
Bra020284.1-P	Field mustard	nucleus	59.12	83.93
Bra002528.1-P	Field mustard	nucleus	83.65	83.12
Bra019477.1-P	Field mustard	nucleus	66.67	62.35
Bra019476.1-P	Field mustard	nucleus	56.6	53.25
Bra018225.1-P	Field mustard	nucleus	62.89	52.08
Bra035678.1-P	Field mustard	nucleus	42.14	45.27
Bra011931.1-P	Field mustard	cytosol	42.14	44.67
Solyc06g075780.1.1	Tomato	nucleus	41.51	42.86
PGSC0003DMT400040144	Potato	nucleus	44.03	42.42
PGSC0003DMT400040143	Potato	nucleus	44.03	42.17
KRH29844	Soybean	nucleus, plastid	37.11	40.97
Solyc11g073060.1.1	Tomato	nucleus	39.62	40.91
PGSC0003DMT400040141	Potato	nucleus	43.4	40.59
PGSC0003DMT400040206	Potato	nucleus	43.4	40.35
PGSC0003DMT400040142	Potato	nucleus	41.51	40.0
PGSC0003DMT400077934	Potato	cytosol, nucleus, plastid	40.88	39.63
KRH24840	Soybean	nucleus	38.36	39.1
PGSC0003DMT400040207	Potato	nucleus	40.25	39.02
Bra005197.1-P	Field mustard	nucleus	39.62	37.72
KRH23029	Soybean	nucleus	39.62	36.84
Bra017188.1-P	Field mustard	nucleus	41.51	36.67
KRH10294	Soybean	nucleus	38.99	36.05
Bra003148.1-P	Field mustard	nucleus	36.48	34.52
Bra030981.1-P	Field mustard	nucleus	37.74	33.15
Bra039806.1-P	Field mustard	nucleus	35.85	32.76
Bra028831.1-P	Field mustard	nucleus	37.11	22.01
Bra009525.1-P	Field mustard	nucleus	36.48	21.89
Bra005766.1-P	Field mustard	nucleus	37.74	21.74
Bra034116.1-P	Field mustard	plastid	35.85	20.5
Bra011970.1-P	Field mustard	nucleus	35.22	19.44
Bra034396.1-P	Field mustard	nucleus	33.96	18.49
Bra029843.1-P	Field mustard	nucleus	35.85	17.54
Bra028791.1-P	Field mustard	nucleus	35.85	16.19
Bra005803.1-P	Field mustard	nucleus	36.48	16.16
Bra009457.1-P	Field mustard	nucleus	33.96	15.65

Protein Annotations

EnsemblPlants:Bra006692.1	EnsemblPlants:Bra006692.1-P	EnsemblPlantsGene:Bra006692	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF318
PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000254021B
UniProt:M4CR50	MapMan:15.5.15	:	:	:	:

Description

AT5G59820 (E=1e-072) RHL41, ZAT12 | RHL41 (RESPONSIVE TO HIGH LIGHT 41); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA03:-:4655037..4655516

Molecular Weight (calculated)

17019.0 Da

IEP (calculated)

10.407

GRAVY (calculated)

-0.211

Length

159 amino acids

Sequence
(BLAST)

001: MVAISEINPT VEAKAANCLM LLSRVGQKGG DQKRVFTCKT CLKEFHSFQA LGGHRASHKK PNNNESLSGL VKKAKAPSSH PCPICGVEFP MGQALGGHMR
101: RHRNEIGGGA ALVTRALLPE PTMTTLKKSS SGKRVACLDL SLGMVENLNL KLELGRTVC

Best Arabidopsis Sequence Match ( AT5G59820.1 )
(BLAST)

001: MVAISEIKST VDVTAANCLM LLSRVGQENV DGGDQKRVFT CKTCLKQFHS FQALGGHRAS HKKPNNDALS SGLMKKVKTS SHPCPICGVE FPMGQALGGH
101: MRRHRNESGA AGGALVTRAL LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY

Arabidopsis Description

ZAT12Zinc finger protein ZAT12 [Source:UniProtKB/Swiss-Prot;Acc:Q42410]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.