Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11255 | Canola | nucleus | 92.03 | 100.0 |
| CDX80870 | Canola | nucleus | 84.78 | 92.13 |
| Bra028831.1-P | Field mustard | nucleus | 80.07 | 82.46 |
| Bra009525.1-P | Field mustard | nucleus | 78.99 | 82.26 |
| AT5G03510.1 | Thale cress | nucleus | 79.35 | 75.0 |
| Bra020284.1-P | Field mustard | nucleus | 17.75 | 43.75 |
| GSMUA_Achr1P03310_001 | Banana | nucleus | 25.36 | 41.92 |
| VIT_08s0007g04770.t01 | Wine grape | nucleus | 40.58 | 40.58 |
| KRH67769 | Soybean | nucleus | 30.8 | 39.35 |
| HORVU2Hr1G122100.1 | Barley | nucleus, plastid | 10.87 | 38.96 |
| Bra011931.1-P | Field mustard | cytosol | 21.01 | 38.67 |
| Bra035678.1-P | Field mustard | nucleus | 20.29 | 37.84 |
| Bra006691.1-P | Field mustard | nucleus | 21.74 | 37.74 |
| Bra006692.1-P | Field mustard | nucleus | 21.74 | 37.74 |
| KRH19960 | Soybean | nucleus | 38.77 | 37.15 |
| Bra005197.1-P | Field mustard | nucleus | 22.46 | 37.13 |
| Bra002528.1-P | Field mustard | nucleus | 21.01 | 36.25 |
| PGSC0003DMT400009871 | Potato | nucleus | 39.13 | 36.24 |
| KRH32562 | Soybean | nucleus | 38.77 | 35.91 |
| Bra039806.1-P | Field mustard | nucleus | 22.46 | 35.63 |
| Bra017188.1-P | Field mustard | nucleus | 23.19 | 35.56 |
| Solyc09g008440.1.1 | Tomato | nucleus | 39.13 | 34.84 |
| Bra003148.1-P | Field mustard | nucleus | 21.01 | 34.52 |
| Bra030981.1-P | Field mustard | nucleus | 22.46 | 34.25 |
| Bra019477.1-P | Field mustard | nucleus | 20.65 | 33.53 |
| HORVU4Hr1G082500.1 | Barley | nucleus | 8.33 | 33.33 |
| HORVU5Hr1G095320.1 | Barley | nucleus | 8.33 | 33.33 |
| HORVU3Hr1G057300.1 | Barley | nucleus | 8.33 | 33.33 |
| Zm00001d036330_P001 | Maize | nucleus | 29.35 | 32.93 |
| KXG20985 | Sorghum | nucleus, plastid | 32.25 | 32.36 |
| Bra011970.1-P | Field mustard | nucleus | 33.33 | 31.94 |
| HORVU1Hr1G012760.1 | Barley | nucleus | 7.97 | 31.88 |
| Bra034396.1-P | Field mustard | nucleus | 32.61 | 30.82 |
| Bra019476.1-P | Field mustard | nucleus | 18.48 | 30.18 |
| Bra009457.1-P | Field mustard | nucleus | 37.68 | 30.14 |
| HORVU1Hr1G020710.1 | Barley | nucleus | 8.33 | 29.87 |
| Zm00001d004439_P001 | Maize | nucleus | 38.77 | 29.8 |
| Bra018225.1-P | Field mustard | nucleus | 20.65 | 29.69 |
| Bra034116.1-P | Field mustard | plastid | 29.71 | 29.5 |
| Os04t0162500-01 | Rice | vacuole | 30.43 | 29.07 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 35.87 | 28.95 |
| Bra028791.1-P | Field mustard | nucleus | 36.59 | 28.69 |
| Bra005803.1-P | Field mustard | nucleus | 37.32 | 28.69 |
| HORVU5Hr1G095330.1 | Barley | nucleus | 7.97 | 28.57 |
| HORVU5Hr1G095390.1 | Barley | nucleus | 7.97 | 28.57 |
| KRG96047 | Soybean | mitochondrion | 36.23 | 27.7 |
| Zm00001d051865_P001 | Maize | nucleus | 32.61 | 27.27 |
| Zm00001d024866_P001 | Maize | nucleus | 35.87 | 27.05 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 35.51 | 26.85 |
| Bra029843.1-P | Field mustard | nucleus | 31.16 | 26.46 |
| Os02t0823900-00 | Rice | cytosol, nucleus, peroxisome | 32.25 | 25.87 |
| EES10410 | Sorghum | nucleus | 36.96 | 25.44 |
| HORVU6Hr1G092750.1 | Barley | nucleus | 31.88 | 24.38 |
| TraesCS6D01G387900.1 | Wheat | nucleus | 32.25 | 24.32 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 31.88 | 24.11 |
| TraesCS6A01G404600.1 | Wheat | nucleus | 31.88 | 23.98 |
| EES07783 | Sorghum | nucleus | 32.61 | 23.02 |
Protein Annotations
| EnsemblPlants:Bra005766.1 | EnsemblPlants:Bra005766.1-P | EnsemblPlantsGene:Bra005766 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 |
| PFAM:PF13912 | PFscan:PS50157 | ScanProsite:PS00028 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000253FB29 |
| UniProt:M4CNH8 | MapMan:15.5.15 | : | : | : | : |
Description
AT5G03510 (E=1e-109) | zinc finger (C2H2 type) family protein
Coordinates
chrA03:+:493275..494105
Molecular Weight (calculated)
30144.0 Da
IEP (calculated)
8.959
GRAVY (calculated)
-0.487
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSVHEETRL VLLIKGKRTK RQRSVSPHMN AEAMSSVCKE ERSLEAREGV GEIEFRGATD EDQDMANCLM LLSQGHKSNT SGDPLLTQKI GFLSNKKPVA
101: SLGLGLNGVY QCKTCDKSFH SFQALGGHRT SHKKPKLGAI ILKCGEKKSA SAVKTVEAAR VVGSFLSLQV TSSEGTKKQE KTHECSICKA EFSSGQALGG
201: HMRRHRGLTL NANANSTTRT EISSSHHQES IREKNFIELD LNLPAPEDEP KFVFASKDQI LLFAAAASNS LIDCHH
101: SLGLGLNGVY QCKTCDKSFH SFQALGGHRT SHKKPKLGAI ILKCGEKKSA SAVKTVEAAR VVGSFLSLQV TSSEGTKKQE KTHECSICKA EFSSGQALGG
201: HMRRHRGLTL NANANSTTRT EISSSHHQES IREKNFIELD LNLPAPEDEP KFVFASKDQI LLFAAAASNS LIDCHH
001: MTSVLEESGD HARLVLLIKG KRTKRQRSAS PLMMNAAAVS SVCSGERSSV EVREEEAAGE VEFQGATDED EDMANCLILL SQGHQAKSSD DHLSMQRMGF
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LZD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.