Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G002400.1 | Wheat | nucleus | 86.3 | 92.11 |
| GSMUA_Achr1P06720_001 | Banana | nucleus | 23.56 | 56.95 |
| Os04t0162500-01 | Rice | vacuole | 43.29 | 54.67 |
| Zm00001d004439_P001 | Maize | nucleus | 52.05 | 52.92 |
| Zm00001d024866_P001 | Maize | nucleus | 50.41 | 50.27 |
| EES10410 | Sorghum | nucleus | 50.14 | 45.64 |
| CDY11027 | Canola | nucleus | 24.93 | 39.39 |
| VIT_08s0007g04770.t01 | Wine grape | nucleus | 28.77 | 38.04 |
| KRH67769 | Soybean | nucleus | 22.47 | 37.96 |
| TraesCS5B01G490400.1 | Wheat | nucleus | 13.7 | 37.59 |
| CDX80870 | Canola | nucleus | 26.03 | 37.4 |
| CDY11255 | Canola | nucleus | 26.03 | 37.4 |
| TraesCS5B01G490500.1 | Wheat | nucleus | 13.7 | 37.31 |
| TraesCS5B01G490900.1 | Wheat | nucleus | 13.97 | 37.23 |
| CDY10376 | Canola | nucleus | 26.3 | 36.23 |
| Bra028831.1-P | Field mustard | nucleus | 26.58 | 36.19 |
| CDY04886 | Canola | nucleus | 26.3 | 35.82 |
| CDY44371 | Canola | nucleus | 26.3 | 35.82 |
| Bra005766.1-P | Field mustard | nucleus | 26.85 | 35.51 |
| TraesCS5B01G491000.1 | Wheat | nucleus | 15.62 | 35.4 |
| VIT_06s0061g00760.t01 | Wine grape | nucleus | 27.95 | 35.29 |
| CDX70302 | Canola | nucleus | 25.48 | 35.09 |
| Bra009525.1-P | Field mustard | nucleus | 25.48 | 35.09 |
| KRH19960 | Soybean | nucleus | 27.67 | 35.07 |
| VIT_13s0019g05170.t01 | Wine grape | nucleus | 28.77 | 34.77 |
| TraesCS5B01G490700.1 | Wheat | nucleus | 12.88 | 34.56 |
| TraesCS4B01G203400.1 | Wheat | nucleus | 17.26 | 34.43 |
| TraesCS5B01G491100.1 | Wheat | nucleus | 12.6 | 33.82 |
| TraesCS5B01G489400.1 | Wheat | nucleus | 14.79 | 33.75 |
| KRH32562 | Soybean | nucleus | 27.4 | 33.56 |
| Solyc06g074800.1.1 | Tomato | nucleus | 29.86 | 33.44 |
| PGSC0003DMT400001104 | Potato | nucleus | 26.58 | 33.33 |
| TraesCS1B01G053000.1 | Wheat | nucleus | 17.26 | 33.16 |
| PGSC0003DMT400018457 | Potato | nucleus | 29.86 | 33.13 |
| TraesCS5B01G491300.1 | Wheat | nucleus | 12.33 | 33.09 |
| PGSC0003DMT400009871 | Potato | nucleus | 26.85 | 32.89 |
| TraesCS1B01G053100.1 | Wheat | nucleus | 16.99 | 32.8 |
| Solyc11g066400.1.1 | Tomato | nucleus, plastid | 26.3 | 32.65 |
| KRH26537 | Soybean | nucleus, plastid | 27.95 | 32.59 |
| Solyc09g008440.1.1 | Tomato | nucleus | 27.67 | 32.58 |
| AT5G03510.1 | Thale cress | nucleus | 26.03 | 32.53 |
| KRG92135 | Soybean | nucleus | 29.04 | 32.42 |
| TraesCS1B01G053200.1 | Wheat | nucleus | 16.71 | 32.28 |
| TraesCS5B01G490800.1 | Wheat | nucleus | 15.07 | 32.16 |
| CDY41350 | Canola | nucleus, plastid | 21.92 | 31.75 |
| KRH22825 | Soybean | nucleus | 27.4 | 31.75 |
| KRH30555 | Soybean | nucleus | 26.58 | 31.49 |
| TraesCS5B01G490300.1 | Wheat | nucleus | 13.97 | 31.48 |
| CDY71034 | Canola | nucleus | 21.1 | 31.43 |
| KRH25111 | Soybean | nucleus, plastid | 27.12 | 31.43 |
| TraesCS5B01G491200.1 | Wheat | nucleus | 15.62 | 31.32 |
| TraesCS3B01G389400.1 | Wheat | nucleus | 16.71 | 31.12 |
| TraesCS5B01G490100.1 | Wheat | nucleus | 14.79 | 30.51 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 30.41 | 30.41 |
| TraesCS3B01G389000.1 | Wheat | nucleus | 17.26 | 30.29 |
| TraesCS5B01G490000.1 | Wheat | nucleus | 14.52 | 29.94 |
| CDY08602 | Canola | nucleus | 27.4 | 29.59 |
| KRH34655 | Soybean | nucleus | 28.77 | 29.49 |
| TraesCS5B01G489800.1 | Wheat | nucleus | 13.97 | 29.14 |
| CDY00945 | Canola | nucleus | 26.85 | 28.99 |
| Bra034116.1-P | Field mustard | plastid | 21.92 | 28.78 |
| CDX70228 | Canola | nucleus | 25.48 | 28.7 |
| TraesCS5B01G490600.1 | Wheat | nucleus | 15.62 | 28.36 |
| CDY44852 | Canola | nucleus | 25.21 | 28.31 |
| Bra029843.1-P | Field mustard | nucleus | 24.93 | 28.0 |
| CDY11288 | Canola | nucleus | 24.93 | 27.66 |
| CDY61764 | Canola | nucleus | 25.48 | 27.35 |
| KRG96047 | Soybean | mitochondrion | 26.85 | 27.15 |
| Bra009457.1-P | Field mustard | nucleus | 25.48 | 26.96 |
| AT5G04390.1 | Thale cress | nucleus | 26.58 | 26.8 |
| CDY58436 | Canola | nucleus | 24.93 | 26.76 |
| Bra028791.1-P | Field mustard | nucleus | 25.75 | 26.7 |
| Solyc05g055500.1.1 | Tomato | nucleus | 26.03 | 26.24 |
| Bra005803.1-P | Field mustard | nucleus | 25.48 | 25.91 |
| AT3G10470.1 | Thale cress | nucleus | 27.95 | 25.63 |
| PGSC0003DMT400079773 | Potato | nucleus | 25.21 | 25.0 |
| TraesCS3B01G389100.1 | Wheat | nucleus | 16.99 | 24.12 |
| CDX89591 | Canola | nucleus | 13.15 | 23.08 |
| TraesCS4B01G143400.1 | Wheat | nucleus | 10.14 | 22.84 |
| TraesCS1B01G295400.1 | Wheat | nucleus | 14.25 | 21.94 |
| CDY42128 | Canola | nucleus | 13.15 | 21.52 |
| CDY05027 | Canola | nucleus | 8.77 | 19.16 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G020300.1 | EnsemblPlantsGene:TraesCS2B01G020300 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF329 | PFAM:PF13912 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr2B:-:9724421..9725518
Molecular Weight (calculated)
37092.4 Da
IEP (calculated)
6.705
GRAVY (calculated)
-0.276
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEAGDGYG HGTPPDALTA IVVKGKRSKR RRVHAAAVIA AAEAEVTAVT TASAAGEVAS SSSSVADGGG WRSGADEAAS GCVTEEEEDM ALCLMLLARG
101: GGGQGSRAGA SSASSSVVVR DDVAESTAGV MAVATAREGK FRSRRPADGG EGEFVYECRT CGKCFPSFQA LGGHRTSHKK PRLPLPPTTA ATASSSEEKK
201: LPADEKTPPP PSSPSPAAAV DRTVLAIPVP ATPPKQEGAA TATVVSSSKQ QQQQQGQGRV HECSICGAEF GSGQALGGHM RRHRPLLPAS ASVSSTDGVA
301: AVLVIRKEKS PLELDLNMPA PCDDAAATEA TSPSPFSFSV KERPSAPAAL LPFPAPASAL VDCHY
101: GGGQGSRAGA SSASSSVVVR DDVAESTAGV MAVATAREGK FRSRRPADGG EGEFVYECRT CGKCFPSFQA LGGHRTSHKK PRLPLPPTTA ATASSSEEKK
201: LPADEKTPPP PSSPSPAAAV DRTVLAIPVP ATPPKQEGAA TATVVSSSKQ QQQQQGQGRV HECSICGAEF GSGQALGGHM RRHRPLLPAS ASVSSTDGVA
301: AVLVIRKEKS PLELDLNMPA PCDDAAATEA TSPSPFSFSV KERPSAPAAL LPFPAPASAL VDCHY
001: MTSVLEESGD HARLVLLIKG KRTKRQRSAS PLMMNAAAVS SVCSGERSSV EVREEEAAGE VEFQGATDED EDMANCLILL SQGHQAKSSD DHLSMQRMGF
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LZD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.