Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g074800.1.1 | Tomato | nucleus | 92.1 | 92.94 |
| PGSC0003DMT400001104 | Potato | nucleus | 52.89 | 59.79 |
| HORVU4Hr1G082500.1 | Barley | nucleus | 10.94 | 52.17 |
| HORVU5Hr1G095320.1 | Barley | nucleus | 10.94 | 52.17 |
| VIT_06s0061g00760.t01 | Wine grape | nucleus | 44.68 | 50.87 |
| HORVU3Hr1G057300.1 | Barley | nucleus | 10.64 | 50.72 |
| HORVU1Hr1G012760.1 | Barley | nucleus | 10.33 | 49.28 |
| PGSC0003DMT400060523 | Potato | mitochondrion | 20.36 | 48.55 |
| HORVU5Hr1G095330.1 | Barley | nucleus | 10.94 | 46.75 |
| HORVU5Hr1G095390.1 | Barley | nucleus | 10.94 | 46.75 |
| HORVU1Hr1G020710.1 | Barley | nucleus | 10.94 | 46.75 |
| HORVU2Hr1G122100.1 | Barley | nucleus, plastid | 10.64 | 45.45 |
| PGSC0003DMT400040144 | Potato | nucleus | 21.28 | 42.42 |
| PGSC0003DMT400040143 | Potato | nucleus | 21.28 | 42.17 |
| PGSC0003DMT400077934 | Potato | cytosol, nucleus, plastid | 20.67 | 41.46 |
| PGSC0003DMT400077933 | Potato | nucleus | 19.45 | 40.76 |
| PGSC0003DMT400040142 | Potato | nucleus | 20.36 | 40.61 |
| PGSC0003DMT400009871 | Potato | nucleus | 36.78 | 40.6 |
| KRH30555 | Soybean | nucleus | 37.99 | 40.58 |
| PGSC0003DMT400040206 | Potato | nucleus | 20.97 | 40.35 |
| PGSC0003DMT400040141 | Potato | nucleus | 20.67 | 40.0 |
| PGSC0003DMT400040207 | Potato | nucleus | 19.76 | 39.63 |
| KRH26537 | Soybean | nucleus, plastid | 37.08 | 38.98 |
| KRH25111 | Soybean | nucleus, plastid | 37.08 | 38.73 |
| KRH22825 | Soybean | nucleus | 37.08 | 38.73 |
| Zm00001d036330_P001 | Maize | nucleus | 27.66 | 36.99 |
| PGSC0003DMT400090011 | Potato | nucleus | 16.72 | 35.48 |
| KXG20985 | Sorghum | nucleus, plastid | 29.48 | 35.27 |
| Zm00001d051865_P001 | Maize | nucleus | 33.13 | 33.03 |
| Zm00001d004439_P001 | Maize | nucleus | 35.87 | 32.87 |
| Os04t0162500-01 | Rice | vacuole | 27.96 | 31.83 |
| Os02t0823900-00 | Rice | cytosol, nucleus, peroxisome | 33.13 | 31.69 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 32.83 | 31.58 |
| HORVU6Hr1G092750.1 | Barley | nucleus | 34.04 | 31.02 |
| PGSC0003DMT400060463 | Potato | nucleus | 19.45 | 30.77 |
| Zm00001d024866_P001 | Maize | nucleus | 34.04 | 30.6 |
| TraesCS6A01G404600.1 | Wheat | nucleus | 34.04 | 30.52 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 33.74 | 30.41 |
| TraesCS6D01G387900.1 | Wheat | nucleus | 33.74 | 30.33 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 33.13 | 29.86 |
| PGSC0003DMT400079773 | Potato | nucleus | 32.83 | 29.35 |
| EES10410 | Sorghum | nucleus | 34.65 | 28.43 |
| EES07783 | Sorghum | nucleus | 33.43 | 28.13 |
| PGSC0003DMT400021456 | Potato | nucleus | 16.11 | 27.6 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400018457 | EnsemblPlantsGene:PGSC0003DMG400007160 | EntrezGene:102592793 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF308 | PFAM:PF13912 |
| PFscan:PS50157 | PGSC:PGSC0003DMG400007160 | RefSeq:XP_006347206.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0002954EC5 | UniProt:M1AAN5 | MapMan:15.5.15 | : | : |
Description
DNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007160]
Coordinates
chr6:-:55343486..55344730
Molecular Weight (calculated)
35849.3 Da
IEP (calculated)
7.078
GRAVY (calculated)
-0.753
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFSEESIDR TLVFKGKRSK RPRQFMAVAM IASTSSTAAA DCGAGGGGSG GDGGEDVYNY SSSMQYSSST TSTTQISTTS STEEDEDMAN CLILLAQSGR
101: CQKLQVESSE RKMVKISSRK FTEMATTTTG KAGFYVYECK TCNRTFPSFQ ALGGHRTSHK KIKTVAEEKK STADSVSPSI DHQQQQEEKF NRITASVTST
201: QTVNKGNSNS HSNLIINSKP KIHECSICGA EFSSGQALGG HMRRHRPPTI TATNTKITVD ETSNNNTSDN SSHDDDQNSK KPKIFLSLDL NLPASPEDDH
301: HRDNNNNFEF SANQQSLVFS AAALVDCHY
101: CQKLQVESSE RKMVKISSRK FTEMATTTTG KAGFYVYECK TCNRTFPSFQ ALGGHRTSHK KIKTVAEEKK STADSVSPSI DHQQQQEEKF NRITASVTST
201: QTVNKGNSNS HSNLIINSKP KIHECSICGA EFSSGQALGG HMRRHRPPTI TATNTKITVD ETSNNNTSDN SSHDDDQNSK KPKIFLSLDL NLPASPEDDH
301: HRDNNNNFEF SANQQSLVFS AAALVDCHY
001: MEAFEEATKE QSLILKGKRT KRQRPQSPIP FSISPPIVST PENNMEEEYT DLDSKDNALG NDEGNHKKDG VITSSSSSAS WSSQNNHTLK AAEDEEDQDI
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84K31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.