Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d004439_P001 | Maize | nucleus | 74.32 | 75.77 |
| EES10410 | Sorghum | nucleus | 80.6 | 73.57 |
| GSMUA_Achr1P06720_001 | Banana | nucleus | 22.68 | 54.97 |
| Os04t0162500-01 | Rice | vacuole | 42.08 | 53.29 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 49.73 | 53.22 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 50.27 | 50.41 |
| CDY11027 | Canola | nucleus | 26.23 | 41.56 |
| Zm00001d034639_P001 | Maize | nucleus | 16.94 | 41.33 |
| VIT_08s0007g04770.t01 | Wine grape | nucleus | 30.33 | 40.22 |
| KRH67769 | Soybean | nucleus | 22.95 | 38.89 |
| CDX80870 | Canola | nucleus | 26.78 | 38.58 |
| CDY11255 | Canola | nucleus | 26.78 | 38.58 |
| Bra028831.1-P | Field mustard | nucleus | 28.14 | 38.43 |
| CDY04886 | Canola | nucleus | 28.14 | 38.43 |
| Zm00001d036330_P001 | Maize | nucleus | 25.68 | 38.21 |
| CDY10376 | Canola | nucleus | 27.6 | 38.11 |
| VIT_13s0019g05170.t01 | Wine grape | nucleus | 31.42 | 38.08 |
| VIT_06s0061g00760.t01 | Wine grape | nucleus | 29.78 | 37.72 |
| CDY44371 | Canola | nucleus | 27.6 | 37.69 |
| Zm00001d012967_P001 | Maize | plastid | 12.84 | 37.3 |
| Bra009525.1-P | Field mustard | nucleus | 26.78 | 36.98 |
| CDX70302 | Canola | nucleus | 26.78 | 36.98 |
| Zm00001d051865_P001 | Maize | nucleus | 33.06 | 36.67 |
| KRH19960 | Soybean | nucleus | 28.42 | 36.11 |
| Bra005766.1-P | Field mustard | nucleus | 27.05 | 35.87 |
| Zm00001d034642_P001 | Maize | nucleus, plastid | 13.93 | 35.17 |
| Zm00001d028667_P001 | Maize | nucleus | 17.49 | 35.16 |
| KRH32562 | Soybean | nucleus | 28.42 | 34.9 |
| AT5G03510.1 | Thale cress | nucleus | 27.6 | 34.59 |
| PGSC0003DMT400001104 | Potato | nucleus | 27.32 | 34.36 |
| Solyc11g066400.1.1 | Tomato | nucleus, plastid | 27.6 | 34.35 |
| PGSC0003DMT400009871 | Potato | nucleus | 27.87 | 34.23 |
| PGSC0003DMT400018457 | Potato | nucleus | 30.6 | 34.04 |
| Solyc09g008440.1.1 | Tomato | nucleus | 28.69 | 33.87 |
| CDY71034 | Canola | nucleus | 22.4 | 33.47 |
| Solyc06g074800.1.1 | Tomato | nucleus | 29.78 | 33.44 |
| Zm00001d047786_P001 | Maize | nucleus | 18.03 | 33.17 |
| KRG92135 | Soybean | nucleus | 29.51 | 33.03 |
| CDY11288 | Canola | nucleus | 28.96 | 32.22 |
| Zm00001d012427_P001 | Maize | nucleus | 14.75 | 31.95 |
| CDX70228 | Canola | nucleus | 27.87 | 31.48 |
| CDY58436 | Canola | nucleus | 29.23 | 31.47 |
| Zm00001d012968_P001 | Maize | nucleus | 15.03 | 31.43 |
| CDY41350 | Canola | nucleus, plastid | 21.58 | 31.35 |
| Zm00001d012430_P001 | Maize | nucleus | 18.03 | 31.28 |
| Zm00001d038379_P001 | Maize | nucleus | 15.85 | 31.18 |
| KRH25111 | Soybean | nucleus, plastid | 26.78 | 31.11 |
| CDY44852 | Canola | nucleus | 27.6 | 31.08 |
| KRH26537 | Soybean | nucleus, plastid | 26.23 | 30.67 |
| KRH30555 | Soybean | nucleus | 25.68 | 30.52 |
| KRH22825 | Soybean | nucleus | 26.23 | 30.48 |
| Zm00001d035609_P001 | Maize | nucleus | 16.39 | 30.3 |
| Zm00001d042933_P001 | Maize | nucleus | 15.03 | 30.22 |
| Zm00001d034641_P001 | Maize | nucleus | 14.21 | 30.06 |
| KRH34655 | Soybean | nucleus | 29.23 | 30.06 |
| Zm00001d042934_P001 | Maize | nucleus | 18.31 | 29.78 |
| Bra009457.1-P | Field mustard | nucleus | 27.87 | 29.57 |
| AT5G04390.1 | Thale cress | nucleus | 29.23 | 29.56 |
| Bra005803.1-P | Field mustard | nucleus | 28.96 | 29.53 |
| CDY61764 | Canola | nucleus | 27.32 | 29.41 |
| CDY08602 | Canola | nucleus | 27.05 | 29.29 |
| CDY00945 | Canola | nucleus | 26.78 | 28.99 |
| Bra034116.1-P | Field mustard | plastid | 21.58 | 28.42 |
| Bra028791.1-P | Field mustard | nucleus | 27.32 | 28.41 |
| Solyc05g055500.1.1 | Tomato | nucleus | 27.87 | 28.18 |
| KRG96047 | Soybean | mitochondrion | 27.6 | 27.98 |
| Bra029843.1-P | Field mustard | nucleus | 24.04 | 27.08 |
| PGSC0003DMT400079773 | Potato | nucleus | 26.78 | 26.63 |
| AT3G10470.1 | Thale cress | nucleus | 28.42 | 26.13 |
| CDX89591 | Canola | nucleus | 14.75 | 25.96 |
| Zm00001d045211_P001 | Maize | nucleus | 12.57 | 25.84 |
| CDY42128 | Canola | nucleus | 14.21 | 23.32 |
| CDY05027 | Canola | nucleus | 9.29 | 20.36 |
Protein Annotations
| EMBL:BT065709 | EnsemblPlants:Zm00001d024866_P001 | EnsemblPlants:Zm00001d024866_T001 | EnsemblPlantsGene:Zm00001d024866 | EntrezGene:100382660 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 |
| PANTHER:PTHR26374:SF329 | PFAM:PF13912 | PFscan:PS50157 | ProteinID:AQK42236.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000194B223 | UniProt:C0PBP0 | MapMan:15.5.15 | : |
Description
C2H2-type zinc finger family protein
Coordinates
chr10:-:91320383..91321483
Molecular Weight (calculated)
37145.6 Da
IEP (calculated)
6.230
GRAVY (calculated)
-0.261
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSGVQEEE AGTPPAMVVP PVVVKGKRSK RQRVHAPPAV VEAAAAAPEW SSSAASAATA PGGDDSGLAT ATSPSAADEA ASAGYCLTKE DEDTALCLML
101: LAHGEPAVAG KDDGGGTVAV AGKEASRFRS RRLAANDGAA SGEYVYECKT CNKCFPSFQA LGGHRTSHKK PRLLLPPVPP QPPQETDHLL APAPAAAVEP
201: TDTSPPPPPP TTTTREGAAD ATVLAIPVAV APKQEGQDAG AAAVPIAIAI AVAASSSGSG SAKQHHPRVH ECSICGAEFG SGQALGGHMR RHRPLVPAAA
301: ASRDDLHAPR KEKSLLELDL NLPAPCNEAD APELTSPRFA FAVADRPPAP PPFPPATPSA LVDCHY
101: LAHGEPAVAG KDDGGGTVAV AGKEASRFRS RRLAANDGAA SGEYVYECKT CNKCFPSFQA LGGHRTSHKK PRLLLPPVPP QPPQETDHLL APAPAAAVEP
201: TDTSPPPPPP TTTTREGAAD ATVLAIPVAV APKQEGQDAG AAAVPIAIAI AVAASSSGSG SAKQHHPRVH ECSICGAEFG SGQALGGHMR RHRPLVPAAA
301: ASRDDLHAPR KEKSLLELDL NLPAPCNEAD APELTSPRFA FAVADRPPAP PPFPPATPSA LVDCHY
001: MTSVLEESGD HARLVLLIKG KRTKRQRSAS PLMMNAAAVS SVCSGERSSV EVREEEAAGE VEFQGATDED EDMANCLILL SQGHQAKSSD DHLSMQRMGF
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LZD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.