Factsheet for Bra034116.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41350	Canola	nucleus, plastid	90.65	100.0
Bra029843.1-P	Field mustard	nucleus	79.86	68.31
AT3G10470.1	Thale cress	nucleus	87.05	60.8
Bra009457.1-P	Field mustard	nucleus	62.95	50.72
Bra005803.1-P	Field mustard	nucleus	65.47	50.7
HORVU3Hr1G057300.1	Barley	nucleus	12.23	49.28
Bra028791.1-P	Field mustard	nucleus	61.51	48.58
HORVU5Hr1G095320.1	Barley	nucleus	11.87	47.83
HORVU2Hr1G122100.1	Barley	nucleus, plastid	12.59	45.45
HORVU4Hr1G082500.1	Barley	nucleus	11.15	44.93
HORVU1Hr1G012760.1	Barley	nucleus	11.15	44.93
KRH67769	Soybean	nucleus	32.73	42.13
Bra020284.1-P	Field mustard	nucleus	16.55	41.07
HORVU5Hr1G095330.1	Barley	nucleus	11.15	40.26
HORVU5Hr1G095390.1	Barley	nucleus	11.15	40.26
HORVU1Hr1G020710.1	Barley	nucleus	10.79	38.96
Bra035678.1-P	Field mustard	nucleus	20.5	38.51
Bra011931.1-P	Field mustard	cytosol	20.5	38.0
Bra005197.1-P	Field mustard	nucleus	22.3	37.13
GSMUA_Achr1P03310_001	Banana	nucleus	22.3	37.13
Bra006692.1-P	Field mustard	nucleus	20.5	35.85
Bra006691.1-P	Field mustard	nucleus	20.5	35.85
Bra002528.1-P	Field mustard	nucleus	20.5	35.62
Bra003148.1-P	Field mustard	nucleus	21.22	35.12
Bra039806.1-P	Field mustard	nucleus	21.94	35.06
VIT_08s0007g04770.t01	Wine grape	nucleus	33.81	34.06
Bra017188.1-P	Field mustard	nucleus	21.58	33.33
PGSC0003DMT400009871	Potato	nucleus	35.61	33.22
Bra030981.1-P	Field mustard	nucleus	21.22	32.6
Bra028831.1-P	Field mustard	nucleus	31.3	32.46
Bra011970.1-P	Field mustard	nucleus	33.45	32.29
Zm00001d036330_P001	Maize	nucleus	28.06	31.71
Solyc09g008440.1.1	Tomato	nucleus	35.25	31.61
Bra009525.1-P	Field mustard	nucleus	29.86	31.32
Bra019477.1-P	Field mustard	nucleus	19.06	31.18
Bra034396.1-P	Field mustard	nucleus	32.37	30.82
Bra005766.1-P	Field mustard	nucleus	29.5	29.71
KRH19960	Soybean	nucleus	30.58	29.51
KXG20985	Sorghum	nucleus, plastid	29.14	29.45
KRH32562	Soybean	nucleus	31.3	29.19
Bra018225.1-P	Field mustard	nucleus	19.42	28.12
Bra019476.1-P	Field mustard	nucleus	16.91	27.81
Os04t0162500-01	Rice	vacuole	28.42	27.34
Os02t0823900-00	Rice	cytosol, nucleus, peroxisome	32.37	26.16
HORVU6Hr1G092750.1	Barley	nucleus	33.09	25.48
TraesCS6B01G448900.1	Wheat	nucleus	33.45	25.48
TraesCS6D01G387900.1	Wheat	nucleus	33.09	25.14
TraesCS6A01G404600.1	Wheat	nucleus	33.09	25.07
Zm00001d051865_P001	Maize	nucleus	29.5	24.85
KRG96047	Soybean	mitochondrion	32.01	24.65
TraesCS2A01G002400.1	Wheat	nucleus	28.06	22.81
Zm00001d004439_P001	Maize	nucleus	29.14	22.56
EES07783	Sorghum	nucleus	31.3	22.25
TraesCS2B01G020300.1	Wheat	nucleus	28.78	21.92
Zm00001d024866_P001	Maize	nucleus	28.42	21.58
EES10410	Sorghum	nucleus	29.14	20.2

Protein Annotations

EnsemblPlants:Bra034116.1	EnsemblPlants:Bra034116.1-P	EnsemblPlantsGene:Bra034116	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF325	PFAM:PF13912
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002543FC9
UniProt:M4EZ73	MapMan:15.5.15	:	:	:	:

Description

AT3G10470 (E=7e-097) | zinc finger (C2H2 type) family protein

Coordinates

chrA01:-:27374140..27374976

Molecular Weight (calculated)

29869.9 Da

IEP (calculated)

9.189

GRAVY (calculated)

-0.559

Length

278 amino acids

Sequence
(BLAST)

001: MANCLILLAQ GHSLPHQQPQ TRQLMVSYQE SGNNNNNAYR SSSRRFLETS SSNGTTTSGG RAGYYVYQCK TCDRTFPSFQ ALGGHRASHK KPKAAPGLHD
101: LKKSIYNDAV SHHLNNVLTT TPNNNNNHRS LVVHGKANNN KVHECGICGA EFTSGQALGG HMRRHRGAGV AATATPTATL ALPASAATAN TVLSLSPMSF
201: DQLSDGPVYP VQAPVKRARS AVVSLDLDLN LPAPEDENRV NGLSVASKQE HGHEQTQGRE EQKSIVLSSA PTLVDCYY

Best Arabidopsis Sequence Match ( AT3G10470.1 )
(BLAST)

001: MEAAAEAVSA AREQSLILKG KRTKRQRPQS PIPFSIIPPM SSHEPDAEEE STSLVSKEKS LNDEINNNNI KNNNNTLING VTSSSSASSS SNNNATLKAT
101: ADEEDQDMAN CLILLAQGHS LPHLQPQPHP QQQTRQLMMS YQDSGNNNNN AYRSSSRRFL ETSSSNGTTT NGGGGRAGYY VYQCKTCDRT FPSFQALGGH
201: RASHKKPKAA MGLHSNHDHK KSNYDDAVSL HLNNVLTTTP NNNSNHRSLV VYGKGSNNKV HECGICGAEF TSGQALGGHM RRHRGAVVAA AAASTATVSV
301: AAIPATANTA LSLSPMSFDQ MSEGPIQAPV KRARSAVVSL DLDLNLPAPE DENRVNGLSF ASKQEHEQEH EQTQQKKQRE EQKSLVLSSA PTLVDCHY

Arabidopsis Description

C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q7G8T1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.