Factsheet for Bra011970.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04544	Canola	nucleus	88.54	99.61
CDX71375	Canola	nucleus	84.72	95.69
Bra034396.1-P	Field mustard	nucleus	81.6	80.48
AT2G28200.1	Thale cress	nucleus	79.17	79.72
Bra020284.1-P	Field mustard	nucleus	16.32	41.96
Bra039806.1-P	Field mustard	nucleus	24.65	40.8
Bra035678.1-P	Field mustard	nucleus	20.83	40.54
Bra011931.1-P	Field mustard	cytosol	20.49	39.33
Bra005197.1-P	Field mustard	nucleus	22.57	38.92
Bra003148.1-P	Field mustard	nucleus	22.22	38.1
Bra009525.1-P	Field mustard	nucleus	34.38	37.36
Bra017188.1-P	Field mustard	nucleus	23.26	37.22
Bra030981.1-P	Field mustard	nucleus	23.26	37.02
Bra002528.1-P	Field mustard	nucleus	19.79	35.62
Bra006692.1-P	Field mustard	nucleus	19.44	35.22
Bra006691.1-P	Field mustard	nucleus	19.44	35.22
Bra028831.1-P	Field mustard	nucleus	32.64	35.07
Bra034116.1-P	Field mustard	plastid	32.29	33.45
Bra005766.1-P	Field mustard	nucleus	31.94	33.33
Bra009457.1-P	Field mustard	nucleus	39.24	32.75
Bra019477.1-P	Field mustard	nucleus	19.1	32.35
Bra005803.1-P	Field mustard	nucleus	40.28	32.31
Bra029843.1-P	Field mustard	nucleus	34.38	30.46
Bra028791.1-P	Field mustard	nucleus	36.81	30.11
Bra018225.1-P	Field mustard	nucleus	19.79	29.69
Bra019476.1-P	Field mustard	nucleus	17.01	28.99

Protein Annotations

EnsemblPlants:Bra011970.1	EnsemblPlants:Bra011970.1-P	EnsemblPlantsGene:Bra011970	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF318	PFAM:PF13912
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00025419AA
UniProt:M4D662	MapMan:15.5.15	:	:	:	:

Description

AT2G28200 (E=4e-105) | nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA07:+:10863331..10864197

Molecular Weight (calculated)

31209.6 Da

IEP (calculated)

8.069

GRAVY (calculated)

-0.581

Length

288 amino acids

Sequence
(BLAST)

001: MMGQDHEVGS DQTQIIKGKR TKRQRSSSST FLVAAAAPTI TSTSSSAGGE RTASEEYNSV VSSPVTTTDC TEEEEDMAIC LIMLARGAAP SPPLPDLKNS
101: TKTDKNLYQK NSSFYVYECK TCNRTFPSFQ ALGGHRASHK KPRASIDEKA KVPLTQLKSS ASEEGQKGHF KVSGPALASK ASNIIISKAN KVHECSICGS
201: EFTSGQALGG HMRRHRTVTN VVSSPVTAAE VSRNSTDEET ENLSRSMEQR KYLPLDLNLP APEDDLRESK FQGIVFSATT PALIDCHY

Best Arabidopsis Sequence Match ( AT2G28200.1 )
(BLAST)

001: MMMGQDEVGS DQTQIIKGKR TKRQRSSSTF VVTAATTVTS TSSSAGGSGG ERAVSDEYNS AVSSPVTTDC TQEEEDMAIC LIMLARGTVL PSPDLKNSRK
101: IHQKISSENS SFYVYECKTC NRTFSSFQAL GGHRASHKKP RTSTEEKTRL PLTQPKSSAS EEGQNSHFKV SGSALASQAS NIINKANKVH ECSICGSEFT
201: SGQALGGHMR RHRTAVTTIS PVAATAEVSR NSTEEEIEIN IGRSMEQQRK YLPLDLNLPA PEDDLRESKF QGIVFSATPA LIDCHY

Arabidopsis Description

ZAT5Zinc finger protein ZAT5 [Source:UniProtKB/Swiss-Prot;Acc:Q681X4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.