Factsheet for Bra020284.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65692	Canola	nucleus	100.0	70.0
Bra006691.1-P	Field mustard	nucleus	83.93	59.12
Bra006692.1-P	Field mustard	nucleus	83.93	59.12
Bra002528.1-P	Field mustard	nucleus	83.04	58.12
AT5G59820.1	Thale cress	nucleus	83.04	57.41
Bra019477.1-P	Field mustard	nucleus	65.18	42.94
Bra019476.1-P	Field mustard	nucleus	60.71	40.24
Bra018225.1-P	Field mustard	nucleus	62.5	36.46
KRH29844	Soybean	nucleus, plastid	43.75	34.03
Bra035678.1-P	Field mustard	nucleus	44.64	33.78
Solyc11g073060.1.1	Tomato	nucleus	46.43	33.77
Bra011931.1-P	Field mustard	cytosol	44.64	33.33
PGSC0003DMT400040144	Potato	nucleus	48.21	32.73
PGSC0003DMT400040143	Potato	nucleus	48.21	32.53
Solyc06g075780.1.1	Tomato	nucleus	44.64	32.47
KRH24840	Soybean	nucleus	44.64	32.05
PGSC0003DMT400040207	Potato	nucleus	46.43	31.71
PGSC0003DMT400040142	Potato	nucleus	45.54	30.91
PGSC0003DMT400040141	Potato	nucleus	45.54	30.0
PGSC0003DMT400077934	Potato	cytosol, nucleus, plastid	43.75	29.88
PGSC0003DMT400040206	Potato	nucleus	45.54	29.82
KRH23029	Soybean	nucleus	45.54	29.82
KRH10294	Soybean	nucleus	45.54	29.65
Bra003148.1-P	Field mustard	nucleus	41.07	27.38
Bra005197.1-P	Field mustard	nucleus	39.29	26.35
Bra017188.1-P	Field mustard	nucleus	41.07	25.56
Bra030981.1-P	Field mustard	nucleus	38.39	23.76
Bra039806.1-P	Field mustard	nucleus	35.71	22.99
Bra028831.1-P	Field mustard	nucleus	44.64	18.66
Bra009525.1-P	Field mustard	nucleus	43.75	18.49
Bra005766.1-P	Field mustard	nucleus	43.75	17.75
Bra034116.1-P	Field mustard	plastid	41.07	16.55
Bra011970.1-P	Field mustard	nucleus	41.96	16.32
Bra034396.1-P	Field mustard	nucleus	41.07	15.75
Bra029843.1-P	Field mustard	nucleus	41.07	14.15
Bra028791.1-P	Field mustard	nucleus	42.86	13.64
Bra009457.1-P	Field mustard	nucleus	41.96	13.62
Bra005803.1-P	Field mustard	nucleus	42.86	13.37

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EnsemblPlantsGene:Bra020284	EnsemblPlants:Bra020284.1	EnsemblPlants:Bra020284.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	UniProt:M4DUU1	PFAM:PF13912	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF318	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00025435FA
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	:	:	:	:

Description

AT5G59820 (E=1e-046) RHL41, ZAT12 | RHL41 (RESPONSIVE TO HIGH LIGHT 41); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA02:-:6021567..6021905

Molecular Weight (calculated)

12042.5 Da

IEP (calculated)

9.815

GRAVY (calculated)

-0.550

Length

112 amino acids

Sequence
(BLAST)

001: MVAVSENKST VEATAANCLM LLSRVGQENG GDYKKRVFTC KTCLKEFQSF QALGGHRASH NKPNNENLSG LIKKAKTPSS HPCPICGVEF PMGQALGGHM
101: RKHRNENGGG VT

Best Arabidopsis Sequence Match ( AT5G59820.1 )
(BLAST)

001: MVAISEIKST VDVTAANCLM LLSRVGQENV DGGDQKRVFT CKTCLKQFHS FQALGGHRAS HKKPNNDALS SGLMKKVKTS SHPCPICGVE FPMGQALGGH
101: MRRHRNESGA AGGALVTRAL LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY

Arabidopsis Description

ZAT12Zinc finger protein ZAT12 [Source:UniProtKB/Swiss-Prot;Acc:Q42410]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.