Factsheet for Bra034396.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70037	Canola	nucleus	84.93	98.41
CDY30501	Canola	nucleus	83.56	97.6
Bra011970.1-P	Field mustard	nucleus	80.48	81.6
AT2G28200.1	Thale cress	nucleus	78.08	79.72
Bra020284.1-P	Field mustard	nucleus	15.75	41.07
Bra011931.1-P	Field mustard	cytosol	20.55	40.0
Bra035678.1-P	Field mustard	nucleus	20.21	39.86
Bra003148.1-P	Field mustard	nucleus	22.26	38.69
Bra039806.1-P	Field mustard	nucleus	22.95	38.51
Bra005197.1-P	Field mustard	nucleus	21.23	37.13
Bra009525.1-P	Field mustard	nucleus	33.56	36.98
Bra017188.1-P	Field mustard	nucleus	21.92	35.56
Bra030981.1-P	Field mustard	nucleus	21.92	35.36
Bra028831.1-P	Field mustard	nucleus	31.85	34.7
Bra006691.1-P	Field mustard	nucleus	18.49	33.96
Bra006692.1-P	Field mustard	nucleus	18.49	33.96
Bra002528.1-P	Field mustard	nucleus	18.49	33.75
Bra005766.1-P	Field mustard	nucleus	30.82	32.61
Bra034116.1-P	Field mustard	plastid	30.82	32.37
Bra009457.1-P	Field mustard	nucleus	37.67	31.88
Bra019477.1-P	Field mustard	nucleus	18.49	31.76
Bra005803.1-P	Field mustard	nucleus	37.67	30.64
Bra029843.1-P	Field mustard	nucleus	33.56	30.15
Bra028791.1-P	Field mustard	nucleus	35.96	29.83
Bra018225.1-P	Field mustard	nucleus	18.84	28.65
Bra019476.1-P	Field mustard	nucleus	16.44	28.4

Protein Annotations

MapMan:15.5.15	EnsemblPlantsGene:Bra034396	EnsemblPlants:Bra034396.1	EnsemblPlants:Bra034396.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	UniProt:M4F003	PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR26374	PANTHER:PTHR26374:SF308	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002543C5F	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

AT2G28200 (E=6e-083) | nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA04:+:12327159..12328037

Molecular Weight (calculated)

31403.7 Da

IEP (calculated)

8.371

GRAVY (calculated)

-0.475

Length

292 amino acids

Sequence
(BLAST)

001: MMSQDHVGSD QTQIIKGKRT KRQRSSSSTF LVAAAAATTN TSSSSSAGDG GGGRAVSDEY NSAVSSPVTT TDCTEEEEDM AICLIMLARG AALSPDLKNS
101: RKADKTLSSA ENSSFFVYEC KTCSRTFSSF QALGGHRASH KKPRVSIEAK TKLPLMQAKS SGSEEGQKSN FKVFGSSLAS LSSNIIISKA NKVHECSICG
201: SEFTSGQALG GHMRRHRTAT TAVIPVSTTE VSRNSTEEET ENLSSYIEQR KYLPLDLNLP APEDDLRESK FQGIVFSTTP ALIDHYKKTA VF

Best Arabidopsis Sequence Match ( AT2G28200.1 )
(BLAST)

001: MMMGQDEVGS DQTQIIKGKR TKRQRSSSTF VVTAATTVTS TSSSAGGSGG ERAVSDEYNS AVSSPVTTDC TQEEEDMAIC LIMLARGTVL PSPDLKNSRK
101: IHQKISSENS SFYVYECKTC NRTFSSFQAL GGHRASHKKP RTSTEEKTRL PLTQPKSSAS EEGQNSHFKV SGSALASQAS NIINKANKVH ECSICGSEFT
201: SGQALGGHMR RHRTAVTTIS PVAATAEVSR NSTEEEIEIN IGRSMEQQRK YLPLDLNLPA PEDDLRESKF QGIVFSATPA LIDCHY

Arabidopsis Description

ZAT5Zinc finger protein ZAT5 [Source:UniProtKB/Swiss-Prot;Acc:Q681X4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.