Factsheet for Bra029843.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08602	Canola	nucleus	92.0	88.46
CDY00945	Canola	nucleus	88.0	84.62
Bra034116.1-P	Field mustard	plastid	68.31	79.86
AT3G10470.1	Thale cress	nucleus	88.62	72.36
Bra009457.1-P	Field mustard	nucleus	60.62	57.1
Bra005803.1-P	Field mustard	nucleus	62.77	56.82
Bra028791.1-P	Field mustard	nucleus	60.92	56.25
HORVU3Hr1G057300.1	Barley	nucleus	9.85	46.38
HORVU5Hr1G095320.1	Barley	nucleus	9.85	46.38
HORVU4Hr1G082500.1	Barley	nucleus	9.23	43.48
HORVU1Hr1G012760.1	Barley	nucleus	9.23	43.48
HORVU2Hr1G122100.1	Barley	nucleus, plastid	10.15	42.86
Bra020284.1-P	Field mustard	nucleus	14.15	41.07
KRH67769	Soybean	nucleus	26.77	40.28
HORVU5Hr1G095390.1	Barley	nucleus	9.23	38.96
HORVU5Hr1G095330.1	Barley	nucleus	9.23	38.96
Bra035678.1-P	Field mustard	nucleus	17.54	38.51
Bra011931.1-P	Field mustard	cytosol	17.54	38.0
GSMUA_Achr1P03310_001	Banana	nucleus	19.38	37.72
HORVU1Hr1G020710.1	Barley	nucleus	8.92	37.66
VIT_08s0007g04770.t01	Wine grape	nucleus	31.38	36.96
Bra005197.1-P	Field mustard	nucleus	18.77	36.53
Bra006692.1-P	Field mustard	nucleus	17.54	35.85
Bra006691.1-P	Field mustard	nucleus	17.54	35.85
Bra002528.1-P	Field mustard	nucleus	17.54	35.62
Bra003148.1-P	Field mustard	nucleus	18.15	35.12
Bra039806.1-P	Field mustard	nucleus	18.77	35.06
PGSC0003DMT400009871	Potato	nucleus	32.0	34.9
Bra028831.1-P	Field mustard	nucleus	28.62	34.7
Bra011970.1-P	Field mustard	nucleus	30.46	34.38
Bra009525.1-P	Field mustard	nucleus	27.69	33.96
Solyc09g008440.1.1	Tomato	nucleus	32.31	33.87
Bra034396.1-P	Field mustard	nucleus	30.15	33.56
Bra017188.1-P	Field mustard	nucleus	18.46	33.33
KRH19960	Soybean	nucleus	29.23	32.99
Bra030981.1-P	Field mustard	nucleus	17.85	32.04
KRH32562	Soybean	nucleus	29.23	31.88
Bra019477.1-P	Field mustard	nucleus	16.62	31.76
Bra005766.1-P	Field mustard	nucleus	26.46	31.16
Zm00001d036330_P001	Maize	nucleus	23.38	30.89
Os04t0162500-01	Rice	vacuole	26.46	29.76
KXG20985	Sorghum	nucleus, plastid	24.92	29.45
Bra018225.1-P	Field mustard	nucleus	17.23	29.17
Bra019476.1-P	Field mustard	nucleus	14.77	28.4
HORVU6Hr1G092750.1	Barley	nucleus	29.54	26.59
Zm00001d051865_P001	Maize	nucleus	26.77	26.36
Os02t0823900-00	Rice	cytosol, nucleus, peroxisome	27.69	26.16
TraesCS6A01G404600.1	Wheat	nucleus	29.54	26.16
TraesCS6B01G448900.1	Wheat	nucleus	29.23	26.03
TraesCS6D01G387900.1	Wheat	nucleus	29.23	25.96
TraesCS2A01G002400.1	Wheat	nucleus	27.08	25.73
Zm00001d004439_P001	Maize	nucleus	28.31	25.63
KRG96047	Soybean	mitochondrion	28.31	25.48
TraesCS2B01G020300.1	Wheat	nucleus	28.0	24.93
Zm00001d024866_P001	Maize	nucleus	27.08	24.04
EES07783	Sorghum	nucleus	27.69	23.02
EES10410	Sorghum	nucleus	27.69	22.44

Protein Annotations

EnsemblPlants:Bra029843.1	EnsemblPlants:Bra029843.1-P	EnsemblPlantsGene:Bra029843	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF325	PFAM:PF13912
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000254794E
UniProt:M4EM23	MapMan:15.5.15	:	:	:	:

Description

AT3G10470 (E=5e-094) | zinc finger (C2H2 type) family protein

Coordinates

chrA05:-:22020403..22021483

Molecular Weight (calculated)

34732.9 Da

IEP (calculated)

6.880

GRAVY (calculated)

-0.628

Length

325 amino acids

Sequence
(BLAST)

001: MSSQEPDVEE ESTSLVSKEK SLNDDINTNK NDNNVLINGV TSPASSSSNN NATLKTAADE EDQDMANCLI LLAQESGNNN NNAYRSSSRR FLETSSPNGT
101: TSGGRAGYYV YQCKTCDRTF PSFQALGGHR ASHKKPKAAA GLHSDHDLKK SIYNDAVSLH LNNVPTATPN NNSSHRSLVV YGKAGNNKVH ECGICGAEFT
201: SGQALGGHMR RHRGAVVASA ASASTATVRV AATAGTANTA LSLSPMSFDH MSVHPVQGPV KRARSAVVSL DLDLNLPAPE DVNRVNGLSF ASKQEQEHEH
301: EQTQQREEQK SIVLSSAPTL VDCHY

Best Arabidopsis Sequence Match ( AT3G10470.1 )
(BLAST)

001: MEAAAEAVSA AREQSLILKG KRTKRQRPQS PIPFSIIPPM SSHEPDAEEE STSLVSKEKS LNDEINNNNI KNNNNTLING VTSSSSASSS SNNNATLKAT
101: ADEEDQDMAN CLILLAQGHS LPHLQPQPHP QQQTRQLMMS YQDSGNNNNN AYRSSSRRFL ETSSSNGTTT NGGGGRAGYY VYQCKTCDRT FPSFQALGGH
201: RASHKKPKAA MGLHSNHDHK KSNYDDAVSL HLNNVLTTTP NNNSNHRSLV VYGKGSNNKV HECGICGAEF TSGQALGGHM RRHRGAVVAA AAASTATVSV
301: AAIPATANTA LSLSPMSFDQ MSEGPIQAPV KRARSAVVSL DLDLNLPAPE DENRVNGLSF ASKQEHEQEH EQTQQKKQRE EQKSLVLSSA PTLVDCHY

Arabidopsis Description

C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q7G8T1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.