Factsheet for Bra039806.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76199	Canola	nucleus	100.0	100.0
Bra003148.1-P	Field mustard	nucleus	71.26	73.81
AT3G53600.1	Thale cress	nucleus	73.56	73.14
Bra030981.1-P	Field mustard	nucleus	50.57	48.62
KRH67564	Soybean	nucleus	47.7	47.98
KRG95848	Soybean	nucleus	47.13	47.95
Bra017188.1-P	Field mustard	nucleus	48.85	47.22
KRH67565	Soybean	cytosol, nucleus, plastid	43.1	47.17
KRH19741	Soybean	nucleus	47.7	47.16
Bra005197.1-P	Field mustard	nucleus	44.83	46.71
KRH19739	Soybean	cytosol, nucleus	42.53	46.54
KRH32333	Soybean	nucleus	43.1	45.73
KRH32335	Soybean	nucleus	45.4	44.13
KRH67566	Soybean	nucleus	39.66	43.67
KRH19742	Soybean	nucleus	45.4	43.41
KRG95850	Soybean	nucleus	38.51	43.23
KRH32334	Soybean	nucleus	43.68	41.99
Bra011931.1-P	Field mustard	cytosol	33.33	38.67
Bra035678.1-P	Field mustard	nucleus	32.18	37.84
Bra006692.1-P	Field mustard	nucleus	32.76	35.85
Bra006691.1-P	Field mustard	nucleus	32.76	35.85
Bra020284.1-P	Field mustard	nucleus	22.99	35.71
GSMUA_Achr8P02630_001	Banana	nucleus	20.11	35.0
GSMUA_Achr6P34280_001	Banana	cytosol, mitochondrion, nucleus	21.84	34.55
Bra002528.1-P	Field mustard	nucleus	31.03	33.75
Bra019477.1-P	Field mustard	nucleus	31.03	31.76
Bra019476.1-P	Field mustard	nucleus	27.01	27.81
Bra018225.1-P	Field mustard	nucleus	29.89	27.08
Bra011970.1-P	Field mustard	nucleus	40.8	24.65
Bra009525.1-P	Field mustard	nucleus	35.06	23.02
Bra034396.1-P	Field mustard	nucleus	38.51	22.95
Bra028831.1-P	Field mustard	nucleus	35.06	22.76
Bra005766.1-P	Field mustard	nucleus	35.63	22.46
Bra034116.1-P	Field mustard	plastid	35.06	21.94
Bra029843.1-P	Field mustard	nucleus	35.06	18.77
Bra028791.1-P	Field mustard	nucleus	35.63	17.61
Bra009457.1-P	Field mustard	nucleus	34.48	17.39
Bra005803.1-P	Field mustard	nucleus	35.63	17.27

Protein Annotations

EnsemblPlants:Bra039806.1	EnsemblPlants:Bra039806.1-P	EnsemblPlantsGene:Bra039806	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF198
PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000254527D
UniProt:M4FFD3	MapMan:15.5.15	:	:	:	:

Description

AT3G53600 (E=1e-068) | zinc finger (C2H2 type) family protein

Coordinates

chrA04:-:3756644..3757168

Molecular Weight (calculated)

19865.8 Da

IEP (calculated)

9.853

GRAVY (calculated)

-0.663

Length

174 amino acids

Sequence
(BLAST)

001: MKRDRSDYED FITHIDMIKT LTMSSHSFVV KQIESTGSKI NGNRFECKTC NRKFDSFQAL GGHRASHKKP KLMSVEQEQA KHRNNENDVH KCSICSQMFG
101: TGQALGGHIR RHRASMINEQ SVISSKVYTS PVNDQCQSSK RVMRLDLNLT PLENDLLNIF AKNLAPHIDL KFVN

Best Arabidopsis Sequence Match ( AT3G53600.1 )
(BLAST)

001: MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN

Arabidopsis Description

At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.