Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07578 | Canola | nucleus | 77.14 | 80.36 |
| Bra003148.1-P | Field mustard | nucleus | 76.57 | 79.76 |
| CDY52747 | Canola | nucleus | 76.57 | 79.76 |
| CDY30857 | Canola | nucleus | 71.43 | 74.85 |
| Bra039806.1-P | Field mustard | nucleus | 73.14 | 73.56 |
| CDX76199 | Canola | nucleus | 73.14 | 73.56 |
| AT2G37430.1 | Thale cress | nucleus | 52.0 | 51.12 |
| KRG95848 | Soybean | nucleus | 47.43 | 48.54 |
| KRH32333 | Soybean | nucleus | 45.14 | 48.17 |
| KRH67564 | Soybean | nucleus | 46.86 | 47.4 |
| KRH19739 | Soybean | cytosol, nucleus | 42.29 | 46.54 |
| KRH19741 | Soybean | nucleus | 46.29 | 46.02 |
| KRH19742 | Soybean | nucleus | 46.86 | 45.05 |
| KRH32335 | Soybean | nucleus | 45.71 | 44.69 |
| KRH67565 | Soybean | cytosol, nucleus, plastid | 40.57 | 44.65 |
| KRH67566 | Soybean | nucleus | 38.29 | 42.41 |
| KRH32334 | Soybean | nucleus | 42.86 | 41.44 |
| KRG95850 | Soybean | nucleus | 36.57 | 41.29 |
| AT2G28710.1 | Thale cress | nucleus | 35.43 | 39.74 |
| GSMUA_Achr6P34280_001 | Banana | cytosol, mitochondrion, nucleus | 22.86 | 36.36 |
| GSMUA_Achr8P02630_001 | Banana | nucleus | 20.57 | 36.0 |
| AT5G59820.1 | Thale cress | nucleus | 32.0 | 34.57 |
| AT3G46070.1 | Thale cress | nucleus | 30.86 | 31.76 |
| AT3G46090.1 | Thale cress | nucleus | 30.29 | 31.55 |
| AT3G46080.1 | Thale cress | nucleus | 29.14 | 31.1 |
| AT2G28200.1 | Thale cress | nucleus | 37.71 | 23.08 |
| AT5G03510.1 | Thale cress | nucleus | 33.71 | 20.21 |
| AT5G04390.1 | Thale cress | nucleus | 33.14 | 16.02 |
| AT3G10470.1 | Thale cress | nucleus | 34.29 | 15.08 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:824528 | EMBL:AB493648 | ProteinID:AEE79115.1 | ArrayExpress:AT3G53600 |
| EnsemblPlantsGene:AT3G53600 | RefSeq:AT3G53600 | TAIR:AT3G53600 | RefSeq:AT3G53600-TAIR-G | EnsemblPlants:AT3G53600.1 | TAIR:AT3G53600.1 |
| EMBL:BT030044 | ProteinID:CAB67667.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0007154 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 |
| GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0009991 | GO:GO:0010200 | GO:GO:0042631 |
| InterPro:IPR013087 | RefSeq:NP_190928.1 | PFAM:PF13912 | PO:PO:0000293 | ScanProsite:PS00028 | PFscan:PS50157 |
| PANTHER:PTHR26374 | PANTHER:PTHR26374:SF198 | UniProt:Q9LFG0 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000009E639 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | : | : | : | : |
Description
At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0]
Coordinates
chr3:+:19875375..19876177
Molecular Weight (calculated)
20148.4 Da
IEP (calculated)
9.591
GRAVY (calculated)
-0.616
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.