Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G46080.1 | Thale cress | nucleus | 68.24 | 70.73 |
| AT3G46090.1 | Thale cress | nucleus | 65.88 | 66.67 |
| Bra019477.1-P | Field mustard | nucleus | 61.76 | 61.76 |
| CDY30924 | Canola | nucleus | 61.18 | 61.18 |
| AT5G59820.1 | Thale cress | nucleus | 58.24 | 61.11 |
| CDX68366 | Canola | nucleus | 60.0 | 57.63 |
| Bra018225.1-P | Field mustard | nucleus | 64.71 | 57.29 |
| CDX99130 | Canola | nucleus | 64.12 | 56.77 |
| Bra019476.1-P | Field mustard | nucleus | 54.12 | 54.44 |
| CDX86044 | Canola | nucleus | 64.71 | 53.92 |
| CDY30925 | Canola | nucleus | 51.76 | 52.07 |
| CDY58688 | Canola | nucleus | 25.29 | 48.31 |
| AT2G28710.1 | Thale cress | nucleus | 38.24 | 41.67 |
| Solyc06g075780.1.1 | Tomato | nucleus | 37.06 | 40.91 |
| KRH29844 | Soybean | nucleus, plastid | 33.53 | 39.58 |
| KRH24840 | Soybean | nucleus | 35.88 | 39.1 |
| PGSC0003DMT400077934 | Potato | cytosol, nucleus, plastid | 37.06 | 38.41 |
| PGSC0003DMT400040144 | Potato | nucleus | 35.88 | 36.97 |
| PGSC0003DMT400040143 | Potato | nucleus | 35.88 | 36.75 |
| PGSC0003DMT400040141 | Potato | nucleus | 35.88 | 35.88 |
| PGSC0003DMT400040206 | Potato | nucleus | 35.88 | 35.67 |
| KRH23029 | Soybean | nucleus | 35.88 | 35.67 |
| KRH10294 | Soybean | nucleus | 35.29 | 34.88 |
| PGSC0003DMT400040207 | Potato | nucleus | 33.53 | 34.76 |
| PGSC0003DMT400040142 | Potato | nucleus | 33.53 | 34.55 |
| Solyc11g073060.1.1 | Tomato | nucleus | 31.18 | 34.42 |
| AT2G37430.1 | Thale cress | nucleus | 33.53 | 32.02 |
| AT3G53600.1 | Thale cress | nucleus | 31.76 | 30.86 |
| AT2G28200.1 | Thale cress | nucleus | 30.59 | 18.18 |
| AT5G03510.1 | Thale cress | nucleus | 29.41 | 17.12 |
| AT5G04390.1 | Thale cress | nucleus | 32.35 | 15.19 |
| AT3G10470.1 | Thale cress | nucleus | 31.76 | 13.57 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:823750 | ProteinID:AEE78109.1 | ArrayExpress:AT3G46070 | EnsemblPlantsGene:AT3G46070 |
| RefSeq:AT3G46070 | TAIR:AT3G46070 | RefSeq:AT3G46070-TAIR-G | EnsemblPlants:AT3G46070.1 | TAIR:AT3G46070.1 | ProteinID:BAH30477.1 |
| ProteinID:CAB90934.1 | EMBL:DQ446739 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0010200 |
| InterPro:IPR013087 | RefSeq:NP_190193.1 | PFAM:PF13912 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009046 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 | UniProt:Q9LX86 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI00000AAEC8 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LX86]
Coordinates
chr3:-:16920445..16920957
Molecular Weight (calculated)
18755.3 Da
IEP (calculated)
8.855
GRAVY (calculated)
-0.617
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAESDNRDL TVDTAASCLM LLSGIGEHDG RKKRVFRCKT CERDFDSFQA LGGHRASHSK LTNSDDKSLP GSPKKKPKTT TTTTAHTCPI CGLEFPMGQA
101: LGGHMRKHRN EKEREKASNV LVTHSFMPET TTVTTLKKSS SGKRVACLDF DLTSVESFVN TELELGRTMY
101: LGGHMRKHRN EKEREKASNV LVTHSFMPET TTVTTLKKSS SGKRVACLDF DLTSVESFVN TELELGRTMY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.