Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019477.1-P | Field mustard | nucleus | 98.24 | 98.24 |
| CDX68366 | Canola | nucleus | 75.88 | 72.88 |
| CDX71073 | Canola | nucleus | 61.76 | 66.46 |
| CDX88724 | Canola | nucleus | 61.18 | 65.41 |
| CDY65692 | Canola | nucleus | 61.18 | 65.0 |
| CDY31593 | Canola | nucleus | 60.59 | 64.38 |
| CDY09252 | Canola | nucleus | 59.41 | 64.33 |
| CDX80226 | Canola | nucleus | 60.0 | 63.35 |
| CDY30925 | Canola | nucleus | 62.94 | 63.31 |
| CDY58688 | Canola | nucleus | 32.35 | 61.8 |
| CDX99130 | Canola | nucleus | 69.41 | 61.46 |
| AT3G46070.1 | Thale cress | nucleus | 61.18 | 61.18 |
| CDX86044 | Canola | nucleus | 70.59 | 58.82 |
| CDX77198 | Canola | nucleus | 37.65 | 43.24 |
| CDY31725 | Canola | nucleus | 37.65 | 43.24 |
| CDY15775 | Canola | nucleus | 37.65 | 42.67 |
| CDY04582 | Canola | nucleus | 37.65 | 42.67 |
| KRH24840 | Soybean | nucleus | 37.06 | 40.38 |
| KRH29844 | Soybean | nucleus, plastid | 34.12 | 40.28 |
| Solyc11g073060.1.1 | Tomato | nucleus | 35.88 | 39.61 |
| Solyc06g075780.1.1 | Tomato | nucleus | 35.88 | 39.61 |
| PGSC0003DMT400040143 | Potato | nucleus | 38.24 | 39.16 |
| PGSC0003DMT400040207 | Potato | nucleus | 37.65 | 39.02 |
| PGSC0003DMT400040144 | Potato | nucleus | 37.65 | 38.79 |
| KRH23029 | Soybean | nucleus | 38.82 | 38.6 |
| PGSC0003DMT400040142 | Potato | nucleus | 37.06 | 38.18 |
| PGSC0003DMT400077934 | Potato | cytosol, nucleus, plastid | 36.47 | 37.8 |
| CDY18446 | Canola | nucleus | 39.41 | 37.22 |
| KRH10294 | Soybean | nucleus | 37.65 | 37.21 |
| PGSC0003DMT400040141 | Potato | nucleus | 37.06 | 37.06 |
| CDX93380 | Canola | nucleus | 38.82 | 36.87 |
| PGSC0003DMT400040206 | Potato | nucleus | 37.06 | 36.84 |
| CDX91362 | Canola | nucleus | 38.82 | 36.67 |
| CDX74961 | Canola | nucleus | 37.65 | 35.56 |
| CDY30857 | Canola | nucleus | 32.94 | 33.53 |
| CDY52747 | Canola | nucleus | 32.94 | 33.33 |
| CDY07578 | Canola | nucleus | 32.94 | 33.33 |
| CDY65670 | Canola | nucleus | 34.71 | 32.96 |
| CDY07790 | Canola | nucleus | 34.71 | 32.6 |
| CDX76199 | Canola | nucleus | 31.76 | 31.03 |
| CDY11027 | Canola | nucleus | 31.76 | 23.38 |
| CDX80870 | Canola | nucleus | 32.94 | 22.05 |
| CDY11255 | Canola | nucleus | 32.35 | 21.65 |
| CDY41350 | Canola | nucleus, plastid | 31.18 | 21.03 |
| CDY71034 | Canola | nucleus | 30.0 | 20.82 |
| CDY30501 | Canola | nucleus | 30.59 | 20.8 |
| CDY10376 | Canola | nucleus | 32.35 | 20.75 |
| CDY70037 | Canola | nucleus | 30.59 | 20.63 |
| CDX70302 | Canola | nucleus | 31.76 | 20.38 |
| CDY04886 | Canola | nucleus | 31.76 | 20.15 |
| CDX71375 | Canola | nucleus | 30.0 | 20.0 |
| CDY04544 | Canola | nucleus | 30.0 | 19.92 |
| CDY44371 | Canola | nucleus | 31.18 | 19.78 |
| CDY11288 | Canola | nucleus | 32.94 | 17.02 |
| CDY58436 | Canola | nucleus | 32.94 | 16.47 |
| CDY08602 | Canola | nucleus | 32.35 | 16.27 |
| CDY00945 | Canola | nucleus | 32.35 | 16.27 |
| CDX70228 | Canola | nucleus | 30.59 | 16.05 |
| CDY61764 | Canola | nucleus | 31.76 | 15.88 |
| CDX89591 | Canola | nucleus | 19.41 | 15.87 |
| CDY44852 | Canola | nucleus | 30.0 | 15.69 |
| CDY05027 | Canola | nucleus | 14.71 | 14.97 |
| CDY42128 | Canola | nucleus | 17.06 | 13.0 |
Protein Annotations
| EnsemblPlants:CDY30924 | EnsemblPlantsGene:GSBRNA2T00046471001 | Gene3D:3.30.160.60 | GO:A0A078H0H1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDY30924 | ProteinID:CDY30924.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EE5A55 | UniProt:A0A078H0H1 | MapMan:15.5.15 | : |
Description
BnaA06g19890DBnaA06g19890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0H1]
Coordinates
chrLK032264:+:16252..16764
Molecular Weight (calculated)
18798.8 Da
IEP (calculated)
10.098
GRAVY (calculated)
-0.555
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVRSENLDQ TVEDTEATCL MLLSKVGECG RERGETRVFR CKTCTKEFSS FQALGGHRAS HKKPVNNSSD EQSSSLSSGS VTKKTKKPLS HTCPICGLEF
101: PMGQALGGHM RKHRNEKERG ALVTRSFLPE AKFTTLKKSS SGKRVACFGM GLDPMERVIN LKLELGRTIY
101: PMGQALGGHM RKHRNEKERG ALVTRSFLPE AKFTTLKKSS SGKRVACFGM GLDPMERVIN LKLELGRTIY
001: MVARSEEVEI VEDTAAKCLM LLSRVGECGG GGEKRVFRCK TCLKEFSSFQ ALGGHRASHK KLINSSDPSL LGSLSNKKTK TATSHPCPIC GVEFPMGQAL
101: GGHMRRHRSE KASPGTLVTR SFLPETTTVT TLKKSSSGKR VACLDLDSME SLVNWKLELG RTIS
101: GGHMRRHRSE KASPGTLVTR SFLPETTTVT TLKKSSSGKR VACLDLDSME SLVNWKLELG RTIS
Arabidopsis Description
ZAT8Zinc finger protein ZAT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX85]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.