Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035678.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX77198 | Canola | nucleus | 98.65 | 98.65 |
| CDY15775 | Canola | nucleus | 92.57 | 91.33 |
| CDY04582 | Canola | nucleus | 91.89 | 90.67 |
| AT2G28710.1 | Thale cress | nucleus | 90.54 | 85.9 |
| CDY09252 | Canola | nucleus | 45.27 | 42.68 |
| CDY65692 | Canola | nucleus | 45.95 | 42.5 |
| CDX71073 | Canola | nucleus | 45.27 | 42.41 |
| CDX88724 | Canola | nucleus | 45.27 | 42.14 |
| CDY31593 | Canola | nucleus | 43.24 | 40.0 |
| CDX80226 | Canola | nucleus | 43.24 | 39.75 |
| PGSC0003DMT400077933 | Potato | nucleus | 41.89 | 39.49 |
| CDY30924 | Canola | nucleus | 43.24 | 37.65 |
| CDX93380 | Canola | nucleus | 43.92 | 36.31 |
| CDX91362 | Canola | nucleus | 43.92 | 36.11 |
| CDX68366 | Canola | nucleus | 42.57 | 35.59 |
| CDY18446 | Canola | nucleus | 43.24 | 35.56 |
| CDY30857 | Canola | nucleus | 39.86 | 35.33 |
| CDX74961 | Canola | nucleus | 42.57 | 35.0 |
| CDY52747 | Canola | nucleus | 39.19 | 34.52 |
| CDY65670 | Canola | nucleus | 41.22 | 34.08 |
| CDY07578 | Canola | nucleus | 38.51 | 33.93 |
| CDX99130 | Canola | nucleus | 43.92 | 33.85 |
| CDY07790 | Canola | nucleus | 41.22 | 33.7 |
| PGSC0003DMT400090011 | Potato | nucleus | 34.46 | 32.9 |
| CDX76199 | Canola | nucleus | 37.84 | 32.18 |
| GSMUA_Achr8P02630_001 | Banana | nucleus | 21.62 | 32.0 |
| CDX86044 | Canola | nucleus | 43.92 | 31.86 |
| GSMUA_Achr6P34280_001 | Banana | cytosol, mitochondrion, nucleus | 23.65 | 31.82 |
| CDY30925 | Canola | nucleus | 35.14 | 30.77 |
| Solyc03g093870.1.1 | Tomato | nucleus | 35.81 | 30.46 |
| CDY58688 | Canola | nucleus | 18.24 | 30.34 |
| PGSC0003DMT400021456 | Potato | nucleus | 37.16 | 28.65 |
| CDY11027 | Canola | nucleus | 36.49 | 23.38 |
| CDY30501 | Canola | nucleus | 39.19 | 23.2 |
| CDX71375 | Canola | nucleus | 39.86 | 23.14 |
| CDY04544 | Canola | nucleus | 39.86 | 23.05 |
| CDY70037 | Canola | nucleus | 39.19 | 23.02 |
| CDY41350 | Canola | nucleus, plastid | 38.51 | 22.62 |
| CDY71034 | Canola | nucleus | 37.16 | 22.45 |
| CDY44371 | Canola | nucleus | 39.86 | 22.01 |
| CDX80870 | Canola | nucleus | 37.16 | 21.65 |
| CDY11255 | Canola | nucleus | 37.16 | 21.65 |
| CDY04886 | Canola | nucleus | 39.19 | 21.64 |
| CDX70302 | Canola | nucleus | 37.84 | 21.13 |
| CDY10376 | Canola | nucleus | 37.84 | 21.13 |
| CDY11288 | Canola | nucleus | 39.86 | 17.93 |
| CDY58436 | Canola | nucleus | 39.86 | 17.35 |
| CDY44852 | Canola | nucleus | 37.84 | 17.23 |
| CDY08602 | Canola | nucleus | 39.19 | 17.16 |
| CDX70228 | Canola | nucleus | 37.16 | 16.98 |
| CDY00945 | Canola | nucleus | 38.51 | 16.86 |
| CDY61764 | Canola | nucleus | 38.51 | 16.76 |
| CDX89591 | Canola | nucleus | 20.95 | 14.9 |
| CDY05027 | Canola | nucleus | 16.22 | 14.37 |
| CDY42128 | Canola | nucleus | 19.59 | 13.0 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078GZ30 | UniProt:A0A078GZ30 | EnsemblPlants:CDY31725 | ProteinID:CDY31725 |
| ProteinID:CDY31725.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00050363001 | InterPro:IPR013087 |
| PFAM:PF13912 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI000254403E | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
BnaA04g16610DBnaA04g16610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZ30]
Coordinates
chrLK032278:+:92322..92768
Molecular Weight (calculated)
16029.6 Da
IEP (calculated)
10.155
GRAVY (calculated)
-0.541
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKEREIEMI NKMASCLIYL SKAHQHDTKS RVFACKTCNK EFPSFQALGG HRASHRRSAA LEGHAPPSPK RVKPVKHECP ICGAEFAVGQ ALGGHMRKHR
101: GGGGSRSLAP APVTMKKSGG GNGKRVLCMD LNLTPGENDD LKLELGML
101: GGGGSRSLAP APVTMKKSGG GNGKRVLCMD LNLTPGENDD LKLELGML
001: MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
Arabidopsis Description
At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.