Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019476.1-P | Field mustard | nucleus | 97.04 | 97.04 |
| CDY58688 | Canola | nucleus | 42.01 | 79.78 |
| CDY30924 | Canola | nucleus | 63.31 | 62.94 |
| CDX68366 | Canola | nucleus | 60.95 | 58.19 |
| CDY09252 | Canola | nucleus | 53.85 | 57.96 |
| CDY65692 | Canola | nucleus | 54.44 | 57.5 |
| CDX99130 | Canola | nucleus | 63.91 | 56.25 |
| CDX71073 | Canola | nucleus | 52.07 | 55.7 |
| CDX88724 | Canola | nucleus | 52.07 | 55.35 |
| CDY31593 | Canola | nucleus | 51.48 | 54.38 |
| CDX80226 | Canola | nucleus | 51.48 | 54.04 |
| CDX86044 | Canola | nucleus | 65.09 | 53.92 |
| AT3G46070.1 | Thale cress | nucleus | 52.07 | 51.76 |
| Solyc11g073060.1.1 | Tomato | nucleus | 34.32 | 37.66 |
| CDY15775 | Canola | nucleus | 32.54 | 36.67 |
| CDY04582 | Canola | nucleus | 32.54 | 36.67 |
| PGSC0003DMT400040207 | Potato | nucleus | 35.5 | 36.59 |
| PGSC0003DMT400040143 | Potato | nucleus | 35.5 | 36.14 |
| PGSC0003DMT400040142 | Potato | nucleus | 34.91 | 35.76 |
| PGSC0003DMT400040144 | Potato | nucleus | 34.91 | 35.76 |
| CDX77198 | Canola | nucleus | 30.77 | 35.14 |
| CDY31725 | Canola | nucleus | 30.77 | 35.14 |
| Solyc06g075780.1.1 | Tomato | nucleus | 31.95 | 35.06 |
| KRH29844 | Soybean | nucleus, plastid | 29.59 | 34.72 |
| PGSC0003DMT400040141 | Potato | nucleus | 34.91 | 34.71 |
| KRH24840 | Soybean | nucleus | 31.95 | 34.62 |
| PGSC0003DMT400040206 | Potato | nucleus | 34.91 | 34.5 |
| KRH10294 | Soybean | nucleus | 34.32 | 33.72 |
| PGSC0003DMT400077934 | Potato | cytosol, nucleus, plastid | 32.54 | 33.54 |
| KRH23029 | Soybean | nucleus | 33.73 | 33.33 |
| CDX91362 | Canola | nucleus | 35.5 | 33.33 |
| CDY18446 | Canola | nucleus | 34.91 | 32.78 |
| CDX93380 | Canola | nucleus | 34.32 | 32.4 |
| CDX74961 | Canola | nucleus | 34.32 | 32.22 |
| CDY65670 | Canola | nucleus | 33.14 | 31.28 |
| CDY52747 | Canola | nucleus | 30.77 | 30.95 |
| CDY07790 | Canola | nucleus | 33.14 | 30.94 |
| CDY07578 | Canola | nucleus | 30.18 | 30.36 |
| CDY30857 | Canola | nucleus | 28.99 | 29.34 |
| CDX76199 | Canola | nucleus | 27.81 | 27.01 |
| CDY11027 | Canola | nucleus | 28.4 | 20.78 |
| CDX80870 | Canola | nucleus | 30.77 | 20.47 |
| CDY11255 | Canola | nucleus | 30.18 | 20.08 |
| CDY30501 | Canola | nucleus | 28.4 | 19.2 |
| CDY70037 | Canola | nucleus | 28.4 | 19.05 |
| CDY44371 | Canola | nucleus | 29.59 | 18.66 |
| CDY04886 | Canola | nucleus | 29.59 | 18.66 |
| CDY41350 | Canola | nucleus, plastid | 27.81 | 18.65 |
| CDY10376 | Canola | nucleus | 28.99 | 18.49 |
| CDY71034 | Canola | nucleus | 26.63 | 18.37 |
| CDX70302 | Canola | nucleus | 28.4 | 18.11 |
| CDX71375 | Canola | nucleus | 27.22 | 18.04 |
| CDY04544 | Canola | nucleus | 27.22 | 17.97 |
| CDY11288 | Canola | nucleus | 30.18 | 15.5 |
| CDY58436 | Canola | nucleus | 30.18 | 15.0 |
| CDX70228 | Canola | nucleus | 27.81 | 14.51 |
| CDY08602 | Canola | nucleus | 28.99 | 14.5 |
| CDY00945 | Canola | nucleus | 28.99 | 14.5 |
| CDY61764 | Canola | nucleus | 28.99 | 14.41 |
| CDY44852 | Canola | nucleus | 27.22 | 14.15 |
| CDY05027 | Canola | nucleus | 13.02 | 13.17 |
| CDX89591 | Canola | nucleus | 15.98 | 12.98 |
| CDY42128 | Canola | nucleus | 13.61 | 10.31 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078GWR0 | UniProt:A0A078GWR0 | EnsemblPlants:CDY30925 | ProteinID:CDY30925 |
| ProteinID:CDY30925.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00046472001 | InterPro:IPR013087 |
| PFAM:PF13912 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EDC472 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
BnaA06g19880DBnaA06g19880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWR0]
Coordinates
chrLK032264:+:20170..20679
Molecular Weight (calculated)
18805.6 Da
IEP (calculated)
8.921
GRAVY (calculated)
-0.556
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSRSESFDR TVEDTTTNCL MLLSRVGECG GGDVEGRVFR CKTCMKEFSS FHALGVHRVS HKKPVSNSNG EEQSGIFIKK KTKKTGWHHR CSICGLEFEM
101: GQALGGHMRK HWNKEDSGGA LITRSFFPEA AMTRTLKETS KEKGVACLEP GSDSIEGINL KLELGRKMY
101: GQALGGHMRK HWNKEDSGGA LITRSFFPEA AMTRTLKETS KEKGVACLEP GSDSIEGINL KLELGRKMY
001: MVARSEEVEI VEDTAAKCLM LLSRVGECGG GGEKRVFRCK TCLKEFSSFQ ALGGHRASHK KLINSSDPSL LGSLSNKKTK TATSHPCPIC GVEFPMGQAL
101: GGHMRRHRSE KASPGTLVTR SFLPETTTVT TLKKSSSGKR VACLDLDSME SLVNWKLELG RTIS
101: GGHMRRHRSE KASPGTLVTR SFLPETTTVT TLKKSSSGKR VACLDLDSME SLVNWKLELG RTIS
Arabidopsis Description
ZAT8Zinc finger protein ZAT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX85]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.