Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006692.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX71073 | Canola | nucleus | 97.48 | 98.1 |
| CDY65692 | Canola | nucleus | 88.68 | 88.12 |
| CDY09252 | Canola | nucleus | 86.79 | 87.9 |
| AT5G59820.1 | Thale cress | nucleus | 87.42 | 85.8 |
| CDX80226 | Canola | nucleus | 86.16 | 85.09 |
| CDY31593 | Canola | nucleus | 84.91 | 84.38 |
| CDY30924 | Canola | nucleus | 65.41 | 61.18 |
| CDX68366 | Canola | nucleus | 61.64 | 55.37 |
| CDY58688 | Canola | nucleus | 29.56 | 52.81 |
| CDX99130 | Canola | nucleus | 63.52 | 52.6 |
| CDY30925 | Canola | nucleus | 55.35 | 52.07 |
| CDX86044 | Canola | nucleus | 63.52 | 49.51 |
| CDY31725 | Canola | nucleus | 42.14 | 45.27 |
| CDX77198 | Canola | nucleus | 42.14 | 45.27 |
| CDY04582 | Canola | nucleus | 42.14 | 44.67 |
| CDY15775 | Canola | nucleus | 42.14 | 44.67 |
| Solyc06g075780.1.1 | Tomato | nucleus | 41.51 | 42.86 |
| PGSC0003DMT400040144 | Potato | nucleus | 44.03 | 42.42 |
| PGSC0003DMT400040143 | Potato | nucleus | 44.03 | 42.17 |
| KRH29844 | Soybean | nucleus, plastid | 37.11 | 40.97 |
| Solyc11g073060.1.1 | Tomato | nucleus | 39.62 | 40.91 |
| PGSC0003DMT400040141 | Potato | nucleus | 43.4 | 40.59 |
| PGSC0003DMT400040206 | Potato | nucleus | 43.4 | 40.35 |
| PGSC0003DMT400040142 | Potato | nucleus | 41.51 | 40.0 |
| PGSC0003DMT400077934 | Potato | cytosol, nucleus, plastid | 40.88 | 39.63 |
| KRH24840 | Soybean | nucleus | 38.36 | 39.1 |
| PGSC0003DMT400040207 | Potato | nucleus | 40.25 | 39.02 |
| CDX93380 | Canola | nucleus | 41.51 | 36.87 |
| KRH23029 | Soybean | nucleus | 39.62 | 36.84 |
| CDX91362 | Canola | nucleus | 41.51 | 36.67 |
| CDY18446 | Canola | nucleus | 41.51 | 36.67 |
| KRH10294 | Soybean | nucleus | 38.99 | 36.05 |
| CDX74961 | Canola | nucleus | 40.25 | 35.56 |
| CDY52747 | Canola | nucleus | 36.48 | 34.52 |
| CDY07578 | Canola | nucleus | 36.48 | 34.52 |
| CDY30857 | Canola | nucleus | 35.85 | 34.13 |
| CDY65670 | Canola | nucleus | 37.74 | 33.52 |
| CDY07790 | Canola | nucleus | 37.74 | 33.15 |
| CDX76199 | Canola | nucleus | 35.85 | 32.76 |
| CDY11027 | Canola | nucleus | 35.85 | 24.68 |
| CDX80870 | Canola | nucleus | 37.11 | 23.23 |
| CDY11255 | Canola | nucleus | 36.48 | 22.83 |
| CDY41350 | Canola | nucleus, plastid | 35.85 | 22.62 |
| CDY04886 | Canola | nucleus | 37.11 | 22.01 |
| CDX70302 | Canola | nucleus | 36.48 | 21.89 |
| CDY10376 | Canola | nucleus | 36.48 | 21.89 |
| CDY44371 | Canola | nucleus | 36.48 | 21.64 |
| CDY71034 | Canola | nucleus | 32.7 | 21.22 |
| CDY30501 | Canola | nucleus | 33.33 | 21.2 |
| CDY70037 | Canola | nucleus | 33.33 | 21.03 |
| CDX71375 | Canola | nucleus | 33.33 | 20.78 |
| CDY04544 | Canola | nucleus | 33.33 | 20.7 |
| CDY11288 | Canola | nucleus | 36.48 | 17.63 |
| CDY58436 | Canola | nucleus | 36.48 | 17.06 |
| CDY00945 | Canola | nucleus | 35.85 | 16.86 |
| CDY08602 | Canola | nucleus | 35.85 | 16.86 |
| CDX70228 | Canola | nucleus | 33.96 | 16.67 |
| CDY44852 | Canola | nucleus | 33.96 | 16.62 |
| CDY61764 | Canola | nucleus | 34.59 | 16.18 |
| CDY05027 | Canola | nucleus | 14.47 | 13.77 |
| CDX89591 | Canola | nucleus | 17.61 | 13.46 |
| CDY42128 | Canola | nucleus | 15.72 | 11.21 |
Protein Annotations
| EnsemblPlants:CDX88724 | EnsemblPlantsGene:GSBRNA2T00148776001 | Gene3D:3.30.160.60 | GO:A0A078DJC8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDX88724 | ProteinID:CDX88724.1 | ScanProsite:PS00028 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI000254021B | MapMan:15.5.15 | : | : | : |
Description
BnaA03g09250D
Coordinates
chrLK031856:+:684630..685253
Molecular Weight (calculated)
17019.0 Da
IEP (calculated)
10.407
GRAVY (calculated)
-0.211
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAISEINPT VEAKAANCLM LLSRVGQKGG DQKRVFTCKT CLKEFHSFQA LGGHRASHKK PNNNESLSGL VKKAKAPSSH PCPICGVEFP MGQALGGHMR
101: RHRNEIGGGA ALVTRALLPE PTMTTLKKSS SGKRVACLDL SLGMVENLNL KLELGRTVC
101: RHRNEIGGGA ALVTRALLPE PTMTTLKKSS SGKRVACLDL SLGMVENLNL KLELGRTVC
001: MVAISEIKST VDVTAANCLM LLSRVGQENV DGGDQKRVFT CKTCLKQFHS FQALGGHRAS HKKPNNDALS SGLMKKVKTS SHPCPICGVE FPMGQALGGH
101: MRRHRNESGA AGGALVTRAL LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY
101: MRRHRNESGA AGGALVTRAL LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY
Arabidopsis Description
ZAT12Zinc finger protein ZAT12 [Source:UniProtKB/Swiss-Prot;Acc:Q42410]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.