Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04390.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42128 | Canola | nucleus | 83.65 | 78.03 |
| CDY05027 | Canola | nucleus | 53.85 | 67.07 |
| CDY61764 | Canola | nucleus | 77.4 | 47.35 |
| CDY71034 | Canola | nucleus | 55.77 | 47.35 |
| Bra028791.1-P | Field mustard | nucleus | 78.37 | 46.31 |
| CDY11288 | Canola | nucleus | 70.19 | 44.38 |
| CDY58436 | Canola | nucleus | 69.23 | 42.35 |
| CDX70228 | Canola | nucleus | 64.42 | 41.36 |
| CDY44852 | Canola | nucleus | 63.94 | 40.92 |
| AT5G04390.1 | Thale cress | nucleus | 68.75 | 39.5 |
| HORVU5Hr1G095320.1 | Barley | nucleus | 12.98 | 39.13 |
| HORVU4Hr1G082500.1 | Barley | nucleus | 12.98 | 39.13 |
| HORVU3Hr1G057300.1 | Barley | nucleus | 12.98 | 39.13 |
| HORVU2Hr1G122100.1 | Barley | nucleus, plastid | 14.42 | 38.96 |
| HORVU1Hr1G020710.1 | Barley | nucleus | 13.46 | 36.36 |
| HORVU1Hr1G012760.1 | Barley | nucleus | 12.02 | 36.23 |
| HORVU5Hr1G095390.1 | Barley | nucleus | 12.98 | 35.06 |
| HORVU5Hr1G095330.1 | Barley | nucleus | 12.98 | 35.06 |
| CDY08602 | Canola | nucleus | 51.92 | 31.95 |
| CDY00945 | Canola | nucleus | 50.96 | 31.36 |
| CDY41350 | Canola | nucleus, plastid | 33.17 | 27.38 |
| CDY58688 | Canola | nucleus | 11.54 | 26.97 |
| CDY11027 | Canola | nucleus | 27.88 | 25.11 |
| VIT_08s0007g04770.t01 | Wine grape | nucleus | 29.81 | 22.46 |
| CDY10376 | Canola | nucleus | 28.37 | 22.26 |
| CDX70302 | Canola | nucleus | 28.37 | 22.26 |
| CDX80870 | Canola | nucleus | 26.92 | 22.05 |
| CDY11255 | Canola | nucleus | 26.92 | 22.05 |
| CDY04886 | Canola | nucleus | 28.37 | 22.01 |
| CDY70037 | Canola | nucleus | 26.44 | 21.83 |
| CDY30501 | Canola | nucleus | 25.96 | 21.6 |
| CDY04582 | Canola | nucleus | 15.38 | 21.33 |
| CDY15775 | Canola | nucleus | 15.38 | 21.33 |
| CDY44371 | Canola | nucleus | 27.4 | 21.27 |
| CDX71375 | Canola | nucleus | 25.96 | 21.18 |
| CDY04544 | Canola | nucleus | 25.96 | 21.09 |
| CDX77198 | Canola | nucleus | 14.9 | 20.95 |
| CDY31725 | Canola | nucleus | 14.9 | 20.95 |
| CDY52747 | Canola | nucleus | 16.83 | 20.83 |
| CDY07578 | Canola | nucleus | 16.83 | 20.83 |
| CDX93380 | Canola | nucleus | 17.79 | 20.67 |
| CDX74961 | Canola | nucleus | 17.79 | 20.56 |
| CDY07790 | Canola | nucleus | 17.79 | 20.44 |
| CDY65670 | Canola | nucleus | 17.31 | 20.11 |
| CDY18446 | Canola | nucleus | 17.31 | 20.0 |
| CDX91362 | Canola | nucleus | 17.31 | 20.0 |
| CDY30924 | Canola | nucleus | 15.87 | 19.41 |
| KRH19960 | Soybean | nucleus | 26.44 | 19.1 |
| PGSC0003DMT400009871 | Potato | nucleus | 26.92 | 18.79 |
| CDY30857 | Canola | nucleus | 14.9 | 18.56 |
| CDY09252 | Canola | nucleus | 13.94 | 18.47 |
| KRH32562 | Soybean | nucleus | 26.44 | 18.46 |
| CDY65692 | Canola | nucleus | 13.94 | 18.12 |
| KRH67769 | Soybean | nucleus | 18.75 | 18.06 |
| CDX76199 | Canola | nucleus | 14.9 | 17.82 |
| Solyc09g008440.1.1 | Tomato | nucleus | 26.44 | 17.74 |
| CDX71073 | Canola | nucleus | 13.46 | 17.72 |
| CDX88724 | Canola | nucleus | 13.46 | 17.61 |
| CDX68366 | Canola | nucleus | 14.9 | 17.51 |
| CDY31593 | Canola | nucleus | 13.46 | 17.5 |
| CDX80226 | Canola | nucleus | 13.46 | 17.39 |
| CDX99130 | Canola | nucleus | 15.87 | 17.19 |
| Zm00001d036330_P001 | Maize | nucleus | 20.19 | 17.07 |
| CDX86044 | Canola | nucleus | 15.87 | 16.18 |
| KXG20985 | Sorghum | nucleus, plastid | 21.15 | 16.0 |
| CDY30925 | Canola | nucleus | 12.98 | 15.98 |
| Zm00001d051865_P001 | Maize | nucleus | 25.0 | 15.76 |
| KRG96047 | Soybean | mitochondrion | 26.92 | 15.51 |
| Zm00001d004439_P001 | Maize | nucleus | 25.96 | 15.04 |
| Os02t0823900-00 | Rice | cytosol, nucleus, peroxisome | 24.52 | 14.83 |
| Zm00001d024866_P001 | Maize | nucleus | 25.96 | 14.75 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 24.04 | 14.62 |
| HORVU6Hr1G092750.1 | Barley | nucleus | 24.52 | 14.13 |
| EES10410 | Sorghum | nucleus | 26.92 | 13.97 |
| TraesCS6D01G387900.1 | Wheat | nucleus | 24.52 | 13.93 |
| Os04t0162500-01 | Rice | vacuole | 19.23 | 13.84 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 24.04 | 13.7 |
| TraesCS6A01G404600.1 | Wheat | nucleus | 24.04 | 13.62 |
| EES07783 | Sorghum | nucleus | 25.0 | 13.3 |
| GSMUA_Achr1P03310_001 | Banana | nucleus | 10.58 | 13.17 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 23.08 | 13.15 |
Protein Annotations
| EnsemblPlants:CDX89591 | EnsemblPlantsGene:GSBRNA2T00149934001 | GO:A0A078DK49 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF325 | PFAM:PF13912 | PFscan:PS50157 |
| ProteinID:CDX89591 | ProteinID:CDX89591.1 | ScanProsite:PS00028 | SEG:seg | UniParc:UPI0004EE61F9 | MapMan:15.5.15 |
Description
BnaC04g36100D
Coordinates
chrLK031859:+:1460835..1461530
Molecular Weight (calculated)
23722.5 Da
IEP (calculated)
7.250
GRAVY (calculated)
-0.750
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAFEELIAT SKEQSLILKG KRTKRQQEYI YLDSKENALG NNVENHKKDG VITSSSSSAS WSSNNNPTTL KAEEDEEDLD IASCLILLSQ GHSLPQLKIP
101: NHETNNNNTY KFSSRRFLET SSSNGGGKAD SYVYQCKTCD WTFSSFQALG GHRASHKKHK ATSFYSNLDQ VFVYDDMYVQ MVRKNRAFVY NHMYVSSFLL
201: YDHSKEPI
101: NHETNNNNTY KFSSRRFLET SSSNGGGKAD SYVYQCKTCD WTFSSFQALG GHRASHKKHK ATSFYSNLDQ VFVYDDMYVQ MVRKNRAFVY NHMYVSSFLL
201: YDHSKEPI
001: MEAFEEATKE QSLILKGKRT KRQRPQSPIP FSISPPIVST PENNMEEEYT DLDSKDNALG NDEGNHKKDG VITSSSSSAS WSSQNNHTLK AAEDEEDQDI
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84K31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.