Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003148.1-P | Field mustard | nucleus | 95.24 | 95.24 |
| CDY52747 | Canola | nucleus | 95.24 | 95.24 |
| AT3G53600.1 | Thale cress | nucleus | 80.36 | 77.14 |
| CDY30857 | Canola | nucleus | 73.81 | 74.25 |
| CDX76199 | Canola | nucleus | 74.4 | 71.84 |
| CDY65670 | Canola | nucleus | 54.17 | 50.84 |
| CDY07790 | Canola | nucleus | 54.17 | 50.28 |
| CDY18446 | Canola | nucleus | 52.98 | 49.44 |
| CDX93380 | Canola | nucleus | 51.79 | 48.6 |
| CDX91362 | Canola | nucleus | 51.79 | 48.33 |
| KRG95848 | Soybean | nucleus | 48.81 | 47.95 |
| KRH32333 | Soybean | nucleus | 46.43 | 47.56 |
| CDX74961 | Canola | nucleus | 50.6 | 47.22 |
| KRH19739 | Soybean | cytosol, nucleus | 44.64 | 47.17 |
| KRH67564 | Soybean | nucleus | 48.21 | 46.82 |
| KRH67565 | Soybean | cytosol, nucleus, plastid | 43.45 | 45.91 |
| KRH32335 | Soybean | nucleus | 48.21 | 45.25 |
| KRH19742 | Soybean | nucleus | 47.62 | 43.96 |
| KRH19741 | Soybean | nucleus | 45.83 | 43.75 |
| KRH67566 | Soybean | nucleus | 41.07 | 43.67 |
| KRG95850 | Soybean | nucleus | 39.29 | 42.58 |
| CDY15775 | Canola | nucleus | 35.12 | 39.33 |
| KRH32334 | Soybean | nucleus | 42.26 | 39.23 |
| CDY04582 | Canola | nucleus | 34.52 | 38.67 |
| CDX77198 | Canola | nucleus | 33.93 | 38.51 |
| CDY31725 | Canola | nucleus | 33.93 | 38.51 |
| CDY09252 | Canola | nucleus | 35.12 | 37.58 |
| CDX71073 | Canola | nucleus | 35.12 | 37.34 |
| CDX88724 | Canola | nucleus | 34.52 | 36.48 |
| GSMUA_Achr8P02630_001 | Banana | nucleus | 21.43 | 36.0 |
| CDY65692 | Canola | nucleus | 33.93 | 35.62 |
| CDY31593 | Canola | nucleus | 33.93 | 35.62 |
| CDX80226 | Canola | nucleus | 33.93 | 35.4 |
| GSMUA_Achr6P34280_001 | Banana | cytosol, mitochondrion, nucleus | 22.02 | 33.64 |
| CDY30924 | Canola | nucleus | 33.33 | 32.94 |
| CDX68366 | Canola | nucleus | 32.74 | 31.07 |
| CDY58688 | Canola | nucleus | 16.07 | 30.34 |
| CDY30925 | Canola | nucleus | 30.36 | 30.18 |
| CDX99130 | Canola | nucleus | 31.55 | 27.6 |
| CDX86044 | Canola | nucleus | 31.55 | 25.98 |
| CDX71375 | Canola | nucleus | 38.1 | 25.1 |
| CDY30501 | Canola | nucleus | 36.31 | 24.4 |
| CDY11027 | Canola | nucleus | 33.33 | 24.24 |
| CDY04544 | Canola | nucleus | 36.9 | 24.22 |
| CDY70037 | Canola | nucleus | 36.31 | 24.21 |
| CDY41350 | Canola | nucleus, plastid | 34.52 | 23.02 |
| CDX80870 | Canola | nucleus | 33.93 | 22.44 |
| CDX70302 | Canola | nucleus | 35.12 | 22.26 |
| CDY11255 | Canola | nucleus | 33.33 | 22.05 |
| CDY10376 | Canola | nucleus | 34.52 | 21.89 |
| CDY04886 | Canola | nucleus | 34.52 | 21.64 |
| CDY71034 | Canola | nucleus | 31.55 | 21.63 |
| CDY44371 | Canola | nucleus | 33.93 | 21.27 |
| CDX70228 | Canola | nucleus | 35.71 | 18.52 |
| CDY44852 | Canola | nucleus | 35.12 | 18.15 |
| CDY08602 | Canola | nucleus | 36.31 | 18.05 |
| CDY00945 | Canola | nucleus | 36.31 | 18.05 |
| CDY11288 | Canola | nucleus | 35.12 | 17.93 |
| CDY58436 | Canola | nucleus | 35.12 | 17.35 |
| CDX89591 | Canola | nucleus | 20.83 | 16.83 |
| CDY05027 | Canola | nucleus | 16.67 | 16.77 |
| CDY61764 | Canola | nucleus | 33.93 | 16.76 |
| CDY42128 | Canola | nucleus | 19.05 | 14.35 |
Protein Annotations
| EnsemblPlants:CDY07578 | EnsemblPlantsGene:GSBRNA2T00124660001 | Gene3D:3.30.160.60 | GO:A0A078F7G9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF198 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDY07578 | ProteinID:CDY07578.1 | ScanProsite:PS00028 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EF17E5 | UniProt:A0A078F7G9 | MapMan:15.5.15 | : | : |
Description
BnaC06g14860DBnaC06g14860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7G9]
Coordinates
chrLK031979:-:833544..834050
Molecular Weight (calculated)
19174.8 Da
IEP (calculated)
9.072
GRAVY (calculated)
-0.803
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRDRSDYEE SITDLDIVKS LMMLSQSFVV KQIEVKQSTR TRTNDNQFEC KTCNRKFDSF QALGGHRASH KKPKLSIDQE QVKHRNNENA AHKCSTCGQM
101: FGTGQALGGH MRKHRESMRT EQPVDSSTVY PVLNRCNSSK CLDLNLTPLE NDLVYAFGKN LADLKFVN
101: FGTGQALGGH MRKHRESMRT EQPVDSSTVY PVLNRCNSSK CLDLNLTPLE NDLVYAFGKN LADLKFVN
001: MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
Arabidopsis Description
At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.