Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30924 | Canola | nucleus | 72.88 | 75.88 |
| CDX99130 | Canola | nucleus | 68.36 | 63.02 |
| CDX71073 | Canola | nucleus | 55.93 | 62.66 |
| CDY58688 | Canola | nucleus | 31.07 | 61.8 |
| CDX88724 | Canola | nucleus | 55.37 | 61.64 |
| CDY65692 | Canola | nucleus | 55.37 | 61.25 |
| CDY30925 | Canola | nucleus | 58.19 | 60.95 |
| CDX86044 | Canola | nucleus | 70.06 | 60.78 |
| CDY31593 | Canola | nucleus | 54.8 | 60.62 |
| AT3G46070.1 | Thale cress | nucleus | 57.63 | 60.0 |
| CDY09252 | Canola | nucleus | 53.11 | 59.87 |
| CDX80226 | Canola | nucleus | 54.24 | 59.63 |
| CDX77198 | Canola | nucleus | 35.59 | 42.57 |
| CDY31725 | Canola | nucleus | 35.59 | 42.57 |
| CDY15775 | Canola | nucleus | 35.59 | 42.0 |
| CDY04582 | Canola | nucleus | 35.59 | 42.0 |
| KRH29844 | Soybean | nucleus, plastid | 33.33 | 40.97 |
| KRH24840 | Soybean | nucleus | 35.03 | 39.74 |
| Solyc06g075780.1.1 | Tomato | nucleus | 34.46 | 39.61 |
| KRH23029 | Soybean | nucleus | 37.85 | 39.18 |
| PGSC0003DMT400040143 | Potato | nucleus | 36.72 | 39.16 |
| PGSC0003DMT400040144 | Potato | nucleus | 36.16 | 38.79 |
| PGSC0003DMT400040207 | Potato | nucleus | 35.59 | 38.41 |
| Solyc11g073060.1.1 | Tomato | nucleus | 33.33 | 38.31 |
| PGSC0003DMT400077934 | Potato | cytosol, nucleus, plastid | 35.03 | 37.8 |
| KRH10294 | Soybean | nucleus | 36.72 | 37.79 |
| PGSC0003DMT400040142 | Potato | nucleus | 35.03 | 37.58 |
| PGSC0003DMT400040141 | Potato | nucleus | 35.59 | 37.06 |
| PGSC0003DMT400040206 | Potato | nucleus | 35.59 | 36.84 |
| CDX93380 | Canola | nucleus | 36.72 | 36.31 |
| CDY18446 | Canola | nucleus | 36.72 | 36.11 |
| CDX91362 | Canola | nucleus | 36.16 | 35.56 |
| CDX74961 | Canola | nucleus | 35.03 | 34.44 |
| CDY65670 | Canola | nucleus | 33.33 | 32.96 |
| CDY30857 | Canola | nucleus | 31.07 | 32.93 |
| CDY07578 | Canola | nucleus | 31.07 | 32.74 |
| CDY52747 | Canola | nucleus | 31.07 | 32.74 |
| CDY07790 | Canola | nucleus | 33.33 | 32.6 |
| CDX76199 | Canola | nucleus | 29.94 | 30.46 |
| CDY11027 | Canola | nucleus | 30.51 | 23.38 |
| CDY30501 | Canola | nucleus | 32.77 | 23.2 |
| CDY70037 | Canola | nucleus | 32.77 | 23.02 |
| CDX80870 | Canola | nucleus | 32.2 | 22.44 |
| CDY11255 | Canola | nucleus | 32.2 | 22.44 |
| CDY04544 | Canola | nucleus | 32.2 | 22.27 |
| CDX71375 | Canola | nucleus | 31.64 | 21.96 |
| CDY41350 | Canola | nucleus, plastid | 30.51 | 21.43 |
| CDY71034 | Canola | nucleus | 29.38 | 21.22 |
| CDY04886 | Canola | nucleus | 31.64 | 20.9 |
| CDY10376 | Canola | nucleus | 31.07 | 20.75 |
| CDY44371 | Canola | nucleus | 31.07 | 20.52 |
| CDX70302 | Canola | nucleus | 30.51 | 20.38 |
| CDY11288 | Canola | nucleus | 32.77 | 17.63 |
| CDY58436 | Canola | nucleus | 32.77 | 17.06 |
| CDY08602 | Canola | nucleus | 32.2 | 16.86 |
| CDY00945 | Canola | nucleus | 32.2 | 16.86 |
| CDY61764 | Canola | nucleus | 32.2 | 16.76 |
| CDX70228 | Canola | nucleus | 29.94 | 16.36 |
| CDY44852 | Canola | nucleus | 29.38 | 16.0 |
| CDY05027 | Canola | nucleus | 14.12 | 14.97 |
| CDX89591 | Canola | nucleus | 17.51 | 14.9 |
| CDY42128 | Canola | nucleus | 15.82 | 12.56 |
Protein Annotations
| EnsemblPlants:CDX68366 | EnsemblPlantsGene:GSBRNA2T00125685001 | Gene3D:3.30.160.60 | GO:A0A078BUD1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDX68366 | ProteinID:CDX68366.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EE8BF5 | MapMan:15.5.15 | : | : |
Description
BnaC01g24440D
Coordinates
chrLK031788:-:98263..98796
Molecular Weight (calculated)
19497.3 Da
IEP (calculated)
8.771
GRAVY (calculated)
-0.500
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MVARSENRSV KDTPAENENF DRTVEDTATS CLMLLPRVGK CIRGESRIYR CKTCMKEFSS FQALGGHRAS HKKPISNSSD DCSSSGSVTK NTKKQSSHTC
101: PICGLEFPMG QALGGHMRKH RNDKESLALV TRSFLPEVLT TTLKKSSSGK RVACFDSELD SMEGIINLNL ELGISIY
101: PICGLEFPMG QALGGHMRKH RNDKESLALV TRSFLPEVLT TTLKKSSSGK RVACFDSELD SMEGIINLNL ELGISIY
001: MVAESDNRDL TVDTAASCLM LLSGIGEHDG RKKRVFRCKT CERDFDSFQA LGGHRASHSK LTNSDDKSLP GSPKKKPKTT TTTTAHTCPI CGLEFPMGQA
101: LGGHMRKHRN EKEREKASNV LVTHSFMPET TTVTTLKKSS SGKRVACLDF DLTSVESFVN TELELGRTMY
101: LGGHMRKHRN EKEREKASNV LVTHSFMPET TTVTTLKKSS SGKRVACLDF DLTSVESFVN TELELGRTMY
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LX86]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.