Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08602 | Canola | nucleus | 96.15 | 96.15 |
| Bra029843.1-P | Field mustard | nucleus | 84.62 | 88.0 |
| CDY41350 | Canola | nucleus, plastid | 58.88 | 78.97 |
| AT3G10470.1 | Thale cress | nucleus | 87.87 | 74.62 |
| CDX70228 | Canola | nucleus | 65.38 | 68.21 |
| CDY44852 | Canola | nucleus | 65.09 | 67.69 |
| CDY11288 | Canola | nucleus | 65.38 | 67.17 |
| CDY58436 | Canola | nucleus | 65.68 | 65.29 |
| CDY71034 | Canola | nucleus | 46.75 | 64.49 |
| CDY61764 | Canola | nucleus | 63.02 | 62.65 |
| CDX89591 | Canola | nucleus | 31.36 | 50.96 |
| CDY42128 | Canola | nucleus | 32.54 | 49.33 |
| HORVU5Hr1G095320.1 | Barley | nucleus | 9.47 | 46.38 |
| HORVU3Hr1G057300.1 | Barley | nucleus | 9.47 | 46.38 |
| CDY11027 | Canola | nucleus | 30.18 | 44.16 |
| HORVU4Hr1G082500.1 | Barley | nucleus | 8.88 | 43.48 |
| HORVU1Hr1G012760.1 | Barley | nucleus | 8.88 | 43.48 |
| HORVU2Hr1G122100.1 | Barley | nucleus, plastid | 9.76 | 42.86 |
| VIT_08s0007g04770.t01 | Wine grape | nucleus | 34.91 | 42.75 |
| CDY70037 | Canola | nucleus | 30.77 | 41.27 |
| CDY30501 | Canola | nucleus | 30.47 | 41.2 |
| CDX71375 | Canola | nucleus | 31.07 | 41.18 |
| CDY05027 | Canola | nucleus | 20.12 | 40.72 |
| CDY04544 | Canola | nucleus | 30.77 | 40.62 |
| CDY04886 | Canola | nucleus | 31.36 | 39.55 |
| GSMUA_Achr1P03310_001 | Banana | nucleus | 19.53 | 39.52 |
| CDY11255 | Canola | nucleus | 29.59 | 39.37 |
| CDX80870 | Canola | nucleus | 29.29 | 38.98 |
| HORVU5Hr1G095330.1 | Barley | nucleus | 8.88 | 38.96 |
| HORVU5Hr1G095390.1 | Barley | nucleus | 8.88 | 38.96 |
| CDX77198 | Canola | nucleus | 16.86 | 38.51 |
| CDY31725 | Canola | nucleus | 16.86 | 38.51 |
| CDY10376 | Canola | nucleus | 30.18 | 38.49 |
| CDX70302 | Canola | nucleus | 30.18 | 38.49 |
| KRH67769 | Soybean | nucleus | 24.56 | 38.43 |
| CDY44371 | Canola | nucleus | 30.18 | 38.06 |
| CDY04582 | Canola | nucleus | 16.86 | 38.0 |
| CDY15775 | Canola | nucleus | 16.86 | 38.0 |
| HORVU1Hr1G020710.1 | Barley | nucleus | 8.58 | 37.66 |
| CDX76199 | Canola | nucleus | 19.23 | 37.36 |
| PGSC0003DMT400009871 | Potato | nucleus | 32.54 | 36.91 |
| CDY52747 | Canola | nucleus | 18.34 | 36.9 |
| KRH19960 | Soybean | nucleus | 31.36 | 36.81 |
| CDY30857 | Canola | nucleus | 18.05 | 36.53 |
| CDY07578 | Canola | nucleus | 18.05 | 36.31 |
| CDY31593 | Canola | nucleus | 17.16 | 36.25 |
| CDX71073 | Canola | nucleus | 16.86 | 36.08 |
| CDX80226 | Canola | nucleus | 17.16 | 36.02 |
| CDX88724 | Canola | nucleus | 16.86 | 35.85 |
| CDY09252 | Canola | nucleus | 16.57 | 35.67 |
| CDY65692 | Canola | nucleus | 16.86 | 35.62 |
| KRH32562 | Soybean | nucleus | 31.07 | 35.23 |
| CDX93380 | Canola | nucleus | 18.64 | 35.2 |
| Solyc09g008440.1.1 | Tomato | nucleus | 32.25 | 35.16 |
| CDY18446 | Canola | nucleus | 18.34 | 34.44 |
| CDX91362 | Canola | nucleus | 18.34 | 34.44 |
| CDX74961 | Canola | nucleus | 18.34 | 34.44 |
| CDY65670 | Canola | nucleus | 17.75 | 33.52 |
| CDY07790 | Canola | nucleus | 17.75 | 33.15 |
| Zm00001d036330_P001 | Maize | nucleus | 23.67 | 32.52 |
| CDY30924 | Canola | nucleus | 16.27 | 32.35 |
| CDX68366 | Canola | nucleus | 16.86 | 32.2 |
| KXG20985 | Sorghum | nucleus, plastid | 25.44 | 31.27 |
| CDX99130 | Canola | nucleus | 17.46 | 30.73 |
| Os04t0162500-01 | Rice | vacuole | 25.15 | 29.41 |
| CDY58688 | Canola | nucleus | 7.69 | 29.21 |
| Zm00001d051865_P001 | Maize | nucleus | 28.4 | 29.09 |
| CDY30925 | Canola | nucleus | 14.5 | 28.99 |
| Zm00001d004439_P001 | Maize | nucleus | 30.47 | 28.69 |
| KRG96047 | Soybean | mitochondrion | 30.47 | 28.53 |
| CDX86044 | Canola | nucleus | 16.86 | 27.94 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 28.11 | 27.78 |
| TraesCS6A01G404600.1 | Wheat | nucleus | 29.88 | 27.52 |
| HORVU6Hr1G092750.1 | Barley | nucleus | 29.29 | 27.42 |
| Os02t0823900-00 | Rice | cytosol, nucleus, peroxisome | 27.51 | 27.03 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 28.99 | 26.85 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 28.99 | 26.85 |
| TraesCS6D01G387900.1 | Wheat | nucleus | 28.99 | 26.78 |
| Zm00001d024866_P001 | Maize | nucleus | 28.99 | 26.78 |
| EES10410 | Sorghum | nucleus | 30.18 | 25.44 |
| EES07783 | Sorghum | nucleus | 29.29 | 25.32 |
Protein Annotations
| EnsemblPlants:CDY00945 | EnsemblPlantsGene:GSBRNA2T00110953001 | Gene3D:3.30.160.60 | GO:A0A078EFT3 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR26374 |
| PANTHER:PTHR26374:SF325 | PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDY00945 | ProteinID:CDY00945.1 | ScanProsite:PS00028 |
| SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EF2B4C | MapMan:15.5.15 | : |
Description
BnaC05g42550D
Coordinates
chrLK031923:+:249484..250638
Molecular Weight (calculated)
36385.2 Da
IEP (calculated)
7.134
GRAVY (calculated)
-0.632
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: METAEEAISA AKEQALILKG KRTKRQRLQS PIPFSIVPPM SSQEPDVEDE STSLVSKEKS LNDEINTNKN DNNMLSNGVT SPASSSSNNN ATLKTAADEE
101: DQDMANCLIL LAQESGNNNN NAYRSSSRRF LETSNGTTSG GRAGYYVYQC KTCDRTFPSF QALGGHRASH KKPKAAAGLH SDHDLKKSLV VYGKANNNKV
201: HECGICGAEF TSGQALGGHM RRHRGAVVAS AASASTATVR VAATAGTANT ALSLSPMSFD QMSVHPVQAP VKRARSAVVS LDLDLNLPAS EDVNRVNGLS
301: FASKQEQEQE HEHEQTHQRE EQKTLVLSSA PTLVDCHY
101: DQDMANCLIL LAQESGNNNN NAYRSSSRRF LETSNGTTSG GRAGYYVYQC KTCDRTFPSF QALGGHRASH KKPKAAAGLH SDHDLKKSLV VYGKANNNKV
201: HECGICGAEF TSGQALGGHM RRHRGAVVAS AASASTATVR VAATAGTANT ALSLSPMSFD QMSVHPVQAP VKRARSAVVS LDLDLNLPAS EDVNRVNGLS
301: FASKQEQEQE HEHEQTHQRE EQKTLVLSSA PTLVDCHY
001: MEAAAEAVSA AREQSLILKG KRTKRQRPQS PIPFSIIPPM SSHEPDAEEE STSLVSKEKS LNDEINNNNI KNNNNTLING VTSSSSASSS SNNNATLKAT
101: ADEEDQDMAN CLILLAQGHS LPHLQPQPHP QQQTRQLMMS YQDSGNNNNN AYRSSSRRFL ETSSSNGTTT NGGGGRAGYY VYQCKTCDRT FPSFQALGGH
201: RASHKKPKAA MGLHSNHDHK KSNYDDAVSL HLNNVLTTTP NNNSNHRSLV VYGKGSNNKV HECGICGAEF TSGQALGGHM RRHRGAVVAA AAASTATVSV
301: AAIPATANTA LSLSPMSFDQ MSEGPIQAPV KRARSAVVSL DLDLNLPAPE DENRVNGLSF ASKQEHEQEH EQTQQKKQRE EQKSLVLSSA PTLVDCHY
101: ADEEDQDMAN CLILLAQGHS LPHLQPQPHP QQQTRQLMMS YQDSGNNNNN AYRSSSRRFL ETSSSNGTTT NGGGGRAGYY VYQCKTCDRT FPSFQALGGH
201: RASHKKPKAA MGLHSNHDHK KSNYDDAVSL HLNNVLTTTP NNNSNHRSLV VYGKGSNNKV HECGICGAEF TSGQALGGHM RRHRGAVVAA AAASTATVSV
301: AAIPATANTA LSLSPMSFDQ MSEGPIQAPV KRARSAVVSL DLDLNLPAPE DENRVNGLSF ASKQEHEQEH EQTQQKKQRE EQKSLVLSSA PTLVDCHY
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q7G8T1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.