Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G404600.1 | Wheat | nucleus | 94.52 | 94.01 |
| TraesCS6D01G387900.1 | Wheat | nucleus | 94.25 | 93.99 |
| HORVU6Hr1G092750.1 | Barley | nucleus | 90.68 | 91.69 |
| Os02t0823900-00 | Rice | cytosol, nucleus, peroxisome | 63.01 | 66.86 |
| Zm00001d051865_P001 | Maize | nucleus | 53.15 | 58.79 |
| EES07783 | Sorghum | nucleus | 57.81 | 53.96 |
| GSMUA_Achr8P12900_001 | Banana | nucleus | 29.59 | 53.47 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.95 | 44.54 |
| VIT_06s0061g00760.t01 | Wine grape | nucleus | 32.05 | 40.48 |
| VIT_08s0007g04770.t01 | Wine grape | nucleus | 29.86 | 39.49 |
| KRH67769 | Soybean | nucleus | 23.01 | 38.89 |
| KRG92135 | Soybean | nucleus | 34.25 | 38.23 |
| CDY11027 | Canola | nucleus | 24.11 | 38.1 |
| PGSC0003DMT400009871 | Potato | nucleus | 30.41 | 37.25 |
| TraesCS5B01G489400.1 | Wheat | nucleus | 15.89 | 36.25 |
| TraesCS5B01G491300.1 | Wheat | nucleus | 13.15 | 35.29 |
| KRH19960 | Soybean | nucleus | 27.67 | 35.07 |
| CDX80870 | Canola | nucleus | 24.38 | 35.04 |
| TraesCS5B01G490900.1 | Wheat | nucleus | 13.15 | 35.04 |
| TraesCS1B01G053200.1 | Wheat | nucleus | 18.08 | 34.92 |
| Solyc09g008440.1.1 | Tomato | nucleus | 29.59 | 34.84 |
| VIT_13s0019g05170.t01 | Wine grape | nucleus | 28.77 | 34.77 |
| KRH30555 | Soybean | nucleus | 29.32 | 34.74 |
| TraesCS1B01G053000.1 | Wheat | nucleus | 18.08 | 34.74 |
| PGSC0003DMT400001104 | Potato | nucleus | 27.67 | 34.71 |
| CDY04886 | Canola | nucleus | 25.48 | 34.7 |
| Bra028831.1-P | Field mustard | nucleus | 25.48 | 34.7 |
| TraesCS5B01G490400.1 | Wheat | nucleus | 12.6 | 34.59 |
| CDY41350 | Canola | nucleus, plastid | 23.84 | 34.52 |
| TraesCS1B01G053100.1 | Wheat | nucleus | 17.81 | 34.39 |
| TraesCS5B01G490500.1 | Wheat | nucleus | 12.6 | 34.33 |
| CDY71034 | Canola | nucleus | 23.01 | 34.29 |
| CDY11255 | Canola | nucleus | 23.84 | 34.25 |
| KRH32562 | Soybean | nucleus | 27.95 | 34.23 |
| Solyc06g074800.1.1 | Tomato | nucleus | 30.41 | 34.05 |
| CDY10376 | Canola | nucleus | 24.66 | 33.96 |
| CDX70302 | Canola | nucleus | 24.66 | 33.96 |
| Bra009525.1-P | Field mustard | nucleus | 24.66 | 33.96 |
| CDY44371 | Canola | nucleus | 24.93 | 33.96 |
| TraesCS5B01G490700.1 | Wheat | nucleus | 12.6 | 33.82 |
| PGSC0003DMT400018457 | Potato | nucleus | 30.41 | 33.74 |
| KRH34655 | Soybean | nucleus | 32.88 | 33.71 |
| Solyc11g066400.1.1 | Tomato | nucleus, plastid | 27.12 | 33.67 |
| TraesCS3B01G389000.1 | Wheat | nucleus | 19.18 | 33.65 |
| Bra034116.1-P | Field mustard | plastid | 25.48 | 33.45 |
| KRH25111 | Soybean | nucleus, plastid | 28.77 | 33.33 |
| TraesCS4B01G203400.1 | Wheat | nucleus | 16.71 | 33.33 |
| TraesCS5B01G491100.1 | Wheat | nucleus | 12.33 | 33.09 |
| AT5G03510.1 | Thale cress | nucleus | 26.3 | 32.88 |
| KRH22825 | Soybean | nucleus | 27.67 | 32.06 |
| Bra005766.1-P | Field mustard | nucleus | 24.11 | 31.88 |
| CDX70228 | Canola | nucleus | 27.95 | 31.48 |
| TraesCS5B01G490300.1 | Wheat | nucleus | 13.97 | 31.48 |
| CDY44852 | Canola | nucleus | 27.95 | 31.38 |
| KRH26537 | Soybean | nucleus, plastid | 26.85 | 31.31 |
| TraesCS3B01G389400.1 | Wheat | nucleus | 16.71 | 31.12 |
| TraesCS5B01G491000.1 | Wheat | nucleus | 13.7 | 31.06 |
| CDY11288 | Canola | nucleus | 27.95 | 31.0 |
| CDY61764 | Canola | nucleus | 28.49 | 30.59 |
| TraesCS5B01G490100.1 | Wheat | nucleus | 14.79 | 30.51 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 30.41 | 30.41 |
| AT5G04390.1 | Thale cress | nucleus | 30.14 | 30.39 |
| CDY58436 | Canola | nucleus | 28.22 | 30.29 |
| Bra009457.1-P | Field mustard | nucleus | 28.49 | 30.14 |
| Bra005803.1-P | Field mustard | nucleus | 29.59 | 30.08 |
| TraesCS5B01G490000.1 | Wheat | nucleus | 14.25 | 29.38 |
| CDY08602 | Canola | nucleus | 27.12 | 29.29 |
| TraesCS5B01G490800.1 | Wheat | nucleus | 13.7 | 29.24 |
| Bra029843.1-P | Field mustard | nucleus | 26.03 | 29.23 |
| CDY00945 | Canola | nucleus | 26.85 | 28.99 |
| Bra028791.1-P | Field mustard | nucleus | 27.67 | 28.69 |
| TraesCS5B01G491200.1 | Wheat | nucleus | 13.97 | 28.02 |
| TraesCS5B01G489800.1 | Wheat | nucleus | 13.42 | 28.0 |
| KRG96047 | Soybean | mitochondrion | 27.67 | 27.98 |
| Solyc05g055500.1.1 | Tomato | nucleus | 27.4 | 27.62 |
| AT3G10470.1 | Thale cress | nucleus | 29.86 | 27.39 |
| TraesCS3B01G389100.1 | Wheat | nucleus | 19.18 | 27.24 |
| PGSC0003DMT400079773 | Potato | nucleus | 26.3 | 26.09 |
| TraesCS5B01G490600.1 | Wheat | nucleus | 13.7 | 24.88 |
| CDX89591 | Canola | nucleus | 13.7 | 24.04 |
| CDY42128 | Canola | nucleus | 13.42 | 21.97 |
| TraesCS1B01G295400.1 | Wheat | nucleus | 14.25 | 21.94 |
| TraesCS4B01G143400.1 | Wheat | nucleus | 9.32 | 20.99 |
| CDY05027 | Canola | nucleus | 9.32 | 20.36 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G448900.1 | EnsemblPlantsGene:TraesCS6B01G448900 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF329 | PFAM:PF13912 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr6B:-:708515661..708516758
Molecular Weight (calculated)
38006.2 Da
IEP (calculated)
8.276
GRAVY (calculated)
-0.326
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MQASAMELVL FREEGAVDDR PQQHGGAVVK RKRTKRPRHL TPPAAAMACS SASSSESTTT EEEDMAHCLI LLAQGAAPPG VVVDSRPPPA TVPQEARQGA
101: SLLPPPGPLP APAVMSTTKT ERYTSRKYTE AATTADGVRA GFYVYECKTC NKCFPTFQAL GGHRASHKKP RLAGADDDTA ANATSVAIAK LSKPPPTKPP
201: LVQMTTASPP QPPPPQVDAA PDVTTVLSLN NGGSAVCNAV NTNRLRVHEC SICGAEFASG QALGGHMRRH RPLHAPADRV TTTTAAAVTA ITASTTKKDS
301: TPAGINLELD LNLPAPSDEE CVSHPPPPPP PSSAPPVVLG LGPFDSGKKR LMLTAASAAL VDCHY
101: SLLPPPGPLP APAVMSTTKT ERYTSRKYTE AATTADGVRA GFYVYECKTC NKCFPTFQAL GGHRASHKKP RLAGADDDTA ANATSVAIAK LSKPPPTKPP
201: LVQMTTASPP QPPPPQVDAA PDVTTVLSLN NGGSAVCNAV NTNRLRVHEC SICGAEFASG QALGGHMRRH RPLHAPADRV TTTTAAAVTA ITASTTKKDS
301: TPAGINLELD LNLPAPSDEE CVSHPPPPPP PSSAPPVVLG LGPFDSGKKR LMLTAASAAL VDCHY
001: MEAFEEATKE QSLILKGKRT KRQRPQSPIP FSISPPIVST PENNMEEEYT DLDSKDNALG NDEGNHKKDG VITSSSSSAS WSSQNNHTLK AAEDEEDQDI
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84K31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.