Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G040300.1 | Wheat | nucleus | 87.83 | 87.83 |
| TraesCS1D01G041600.1 | Wheat | nucleus | 87.83 | 86.91 |
| TraesCS1B01G053200.1 | Wheat | nucleus | 86.77 | 86.77 |
| HORVU1Hr1G006910.1 | Barley | nucleus | 87.3 | 85.94 |
| TraesCS1B01G053000.1 | Wheat | nucleus | 70.37 | 70.0 |
| Os05t0114400-01 | Rice | nucleus | 64.55 | 61.62 |
| KXG21109 | Sorghum | nucleus | 63.49 | 59.41 |
| Zm00001d035609_P001 | Maize | nucleus | 60.32 | 57.58 |
| PGSC0003DMT400060523 | Potato | mitochondrion | 38.1 | 52.17 |
| Solyc05g054650.1.1 | Tomato | plastid | 38.62 | 48.03 |
| GSMUA_Achr9P03210_001 | Banana | nucleus | 35.45 | 47.86 |
| VIT_06s0004g04180.t01 | Wine grape | nucleus | 39.68 | 47.17 |
| TraesCS4B01G203400.1 | Wheat | nucleus | 44.97 | 46.45 |
| VIT_13s0019g00480.t01 | Wine grape | nucleus | 40.74 | 43.75 |
| KRH01600 | Soybean | cytosol, extracellular, nucleus | 39.68 | 42.86 |
| Solyc05g054660.1.1 | Tomato | nucleus, plastid | 37.57 | 42.52 |
| KRH70509 | Soybean | nucleus | 39.68 | 41.67 |
| KRG90559 | Soybean | nucleus | 38.1 | 41.62 |
| KRH36195 | Soybean | extracellular | 38.62 | 39.46 |
| TraesCS5B01G489400.1 | Wheat | nucleus | 31.22 | 36.88 |
| TraesCS5B01G490400.1 | Wheat | nucleus | 24.87 | 35.34 |
| TraesCS5B01G491300.1 | Wheat | nucleus | 24.34 | 33.82 |
| TraesCS5B01G490700.1 | Wheat | nucleus | 24.34 | 33.82 |
| TraesCS3B01G389000.1 | Wheat | nucleus | 37.04 | 33.65 |
| TraesCS5B01G490900.1 | Wheat | nucleus | 24.34 | 33.58 |
| TraesCS5B01G491100.1 | Wheat | nucleus | 23.81 | 33.09 |
| PGSC0003DMT400060463 | Potato | nucleus | 35.98 | 32.69 |
| TraesCS5B01G490500.1 | Wheat | nucleus | 22.75 | 32.09 |
| TraesCS5B01G491000.1 | Wheat | nucleus | 25.93 | 30.43 |
| TraesCS5B01G490300.1 | Wheat | nucleus | 24.87 | 29.01 |
| TraesCS5B01G490800.1 | Wheat | nucleus | 25.4 | 28.07 |
| TraesCS5B01G490100.1 | Wheat | nucleus | 25.93 | 27.68 |
| TraesCS3B01G389400.1 | Wheat | nucleus | 28.57 | 27.55 |
| TraesCS5B01G491200.1 | Wheat | nucleus | 25.93 | 26.92 |
| TraesCS3B01G389100.1 | Wheat | nucleus | 36.51 | 26.85 |
| TraesCS5B01G490000.1 | Wheat | nucleus | 24.87 | 26.55 |
| TraesCS5B01G489800.1 | Wheat | nucleus | 24.34 | 26.29 |
| TraesCS5B01G490600.1 | Wheat | nucleus | 25.4 | 23.88 |
| TraesCS1B01G295400.1 | Wheat | nucleus | 25.93 | 20.68 |
| TraesCS4B01G143400.1 | Wheat | nucleus | 16.4 | 19.14 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 34.39 | 17.81 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 32.8 | 16.99 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G053100.1 | EnsemblPlantsGene:TraesCS1B01G053100 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF162 | PFAM:PF13912 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr1B:-:33920978..33921547
Molecular Weight (calculated)
20388.6 Da
IEP (calculated)
7.236
GRAVY (calculated)
-0.322
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKRFAFVEK EMARMLLLVS PEQAMSTPMP TAVRGDRAPG RVFVCKTCDR VFPSFQALGG HRASHKKPRL DDGSDLKPKL HGCSVCGLEF AIGQALGGHM
101: RRHRPMAAGG GGGVMAMTPP IEAIKMHGDS SDDAVVGMKR GLWLDLNHPP CDEYGAGNES EDECGHDRAT AGYTFHQFLD TGTMAVDCV
101: RRHRPMAAGG GGGVMAMTPP IEAIKMHGDS SDDAVVGMKR GLWLDLNHPP CDEYGAGNES EDECGHDRAT AGYTFHQFLD TGTMAVDCV
001: MVAISEIKST VDVTAANCLM LLSRVGQENV DGGDQKRVFT CKTCLKQFHS FQALGGHRAS HKKPNNDALS SGLMKKVKTS SHPCPICGVE FPMGQALGGH
101: MRRHRNESGA AGGALVTRAL LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY
101: MRRHRNESGA AGGALVTRAL LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY
Arabidopsis Description
ZAT12Zinc finger protein ZAT12 [Source:UniProtKB/Swiss-Prot;Acc:Q42410]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.