Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G490600.1 | Wheat | nucleus | 87.01 | 90.59 |
| TraesCS5B01G490300.1 | Wheat | nucleus | 80.79 | 88.27 |
| TraesCS5A01G477000.1 | Wheat | nucleus | 88.7 | 88.2 |
| TraesCS5B01G490100.1 | Wheat | nucleus | 86.44 | 86.44 |
| TraesCS5B01G491000.1 | Wheat | nucleus | 66.1 | 72.67 |
| HORVU5Hr1G112870.1 | Barley | nucleus | 78.53 | 72.02 |
| TraesCS5B01G490800.1 | Wheat | nucleus | 65.54 | 67.84 |
| TraesCS5B01G491200.1 | Wheat | nucleus | 64.97 | 63.19 |
| TraesCS5B01G489800.1 | Wheat | nucleus | 61.02 | 61.71 |
| TraesCS5B01G490600.1 | Wheat | nucleus | 70.06 | 61.69 |
| Zm00001d034641_P001 | Maize | nucleus | 54.24 | 55.49 |
| EER93194 | Sorghum | nucleus, plastid | 56.5 | 54.64 |
| Os03t0820300-01 | Rice | nucleus | 51.98 | 54.12 |
| Zm00001d012968_P001 | Maize | nucleus | 51.41 | 52.0 |
| TraesCS5B01G490400.1 | Wheat | nucleus | 38.42 | 51.13 |
| TraesCS5B01G490900.1 | Wheat | nucleus | 39.55 | 51.09 |
| TraesCS5B01G490700.1 | Wheat | nucleus | 38.98 | 50.74 |
| TraesCS5B01G491300.1 | Wheat | nucleus | 36.72 | 47.79 |
| TraesCS5B01G491100.1 | Wheat | nucleus | 36.16 | 47.06 |
| TraesCS5B01G490500.1 | Wheat | nucleus | 35.59 | 47.01 |
| PGSC0003DMT400060523 | Potato | mitochondrion | 25.99 | 33.33 |
| VIT_06s0004g04180.t01 | Wine grape | nucleus | 28.81 | 32.08 |
| Solyc05g054650.1.1 | Tomato | plastid | 25.99 | 30.26 |
| KRG90559 | Soybean | nucleus | 29.38 | 30.06 |
| TraesCS5B01G489400.1 | Wheat | nucleus | 26.55 | 29.38 |
| KRH01600 | Soybean | cytosol, extracellular, nucleus | 28.25 | 28.57 |
| VIT_13s0019g00480.t01 | Wine grape | nucleus | 28.25 | 28.41 |
| Solyc05g054660.1.1 | Tomato | nucleus, plastid | 26.55 | 28.14 |
| KRH70509 | Soybean | nucleus | 28.25 | 27.78 |
| KRH36195 | Soybean | extracellular | 28.81 | 27.57 |
| TraesCS4B01G203400.1 | Wheat | nucleus | 28.25 | 27.32 |
| TraesCS3B01G389400.1 | Wheat | nucleus | 28.25 | 25.51 |
| TraesCS1B01G053000.1 | Wheat | nucleus | 27.12 | 25.26 |
| TraesCS1B01G295400.1 | Wheat | nucleus | 33.33 | 24.89 |
| TraesCS1B01G053200.1 | Wheat | nucleus | 26.55 | 24.87 |
| TraesCS1B01G053100.1 | Wheat | nucleus | 26.55 | 24.87 |
| TraesCS4B01G143400.1 | Wheat | nucleus | 21.47 | 23.46 |
| TraesCS3B01G389000.1 | Wheat | nucleus | 27.12 | 23.08 |
| PGSC0003DMT400060463 | Potato | nucleus | 25.42 | 21.63 |
| TraesCS3B01G389100.1 | Wheat | nucleus | 28.25 | 19.46 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 29.94 | 14.52 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 29.38 | 14.25 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G490000.1 | EnsemblPlantsGene:TraesCS5B01G490000 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF166 | PFAM:PF13912 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr5B:-:659505428..659506235
Molecular Weight (calculated)
19314.1 Da
IEP (calculated)
11.010
GRAVY (calculated)
-0.616
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGMKRSRD EEVLSLKLAP TTDSSTSSTT SADSAGSPAK KARRRMRGAV VATSGQGEFV CKTCGRAFAS FQALGGHRTS HLRGRHELEL GVGVTRAIRE
101: RRRRENKLHE CSICGMGFET GQALGGHMRR HREEMALRGR GDDEQWVCRG VELQPGQVVT GHQTTSNQPP VLLKLFV
101: RRRRENKLHE CSICGMGFET GQALGGHMRR HREEMALRGR GDDEQWVCRG VELQPGQVVT GHQTTSNQPP VLLKLFV
001: MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
Arabidopsis Description
At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.