Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G491400.1 | Wheat | nucleus | 85.38 | 86.9 |
| TraesCS5D01G491200.1 | Wheat | nucleus | 82.46 | 86.5 |
| TraesCS5B01G491000.1 | Wheat | nucleus | 77.19 | 81.99 |
| TraesCS5A01G478300.1 | Wheat | nucleus | 78.95 | 81.82 |
| HORVU5Hr1G113090.1 | Barley | nucleus | 80.7 | 80.23 |
| TraesCS5B01G491200.1 | Wheat | nucleus | 80.7 | 75.82 |
| HORVU5Hr1G112970.1 | Barley | nucleus | 80.7 | 72.63 |
| TraesCS5B01G489800.1 | Wheat | nucleus | 69.59 | 68.0 |
| TraesCS5B01G490100.1 | Wheat | nucleus | 69.59 | 67.23 |
| TraesCS5B01G490300.1 | Wheat | nucleus | 62.57 | 66.05 |
| TraesCS5B01G490000.1 | Wheat | nucleus | 67.84 | 65.54 |
| TraesCS5B01G490600.1 | Wheat | nucleus | 76.61 | 65.17 |
| HORVU5Hr1G045760.1 | Barley | nucleus | 80.7 | 60.0 |
| Os03t0820300-01 | Rice | nucleus | 59.06 | 59.41 |
| Zm00001d034641_P001 | Maize | nucleus | 59.06 | 58.38 |
| TraesCS5B01G490400.1 | Wheat | nucleus | 44.44 | 57.14 |
| EER93194 | Sorghum | nucleus, plastid | 60.82 | 56.83 |
| Zm00001d012968_P001 | Maize | nucleus | 56.14 | 54.86 |
| TraesCS5B01G490900.1 | Wheat | nucleus | 43.86 | 54.74 |
| TraesCS5B01G490700.1 | Wheat | nucleus | 43.27 | 54.41 |
| TraesCS5B01G491300.1 | Wheat | nucleus | 42.69 | 53.68 |
| TraesCS5B01G490500.1 | Wheat | nucleus | 41.52 | 52.99 |
| TraesCS5B01G491100.1 | Wheat | nucleus | 39.77 | 50.0 |
| PGSC0003DMT400060523 | Potato | mitochondrion | 26.9 | 33.33 |
| Solyc05g054650.1.1 | Tomato | plastid | 27.49 | 30.92 |
| VIT_06s0004g04180.t01 | Wine grape | nucleus | 28.66 | 30.82 |
| TraesCS5B01G489400.1 | Wheat | nucleus | 28.66 | 30.62 |
| KRG90559 | Soybean | nucleus | 29.82 | 29.48 |
| VIT_13s0019g00480.t01 | Wine grape | nucleus | 29.82 | 28.98 |
| Solyc05g054660.1.1 | Tomato | nucleus, plastid | 27.49 | 28.14 |
| KRH01600 | Soybean | cytosol, extracellular, nucleus | 28.66 | 28.0 |
| TraesCS4B01G203400.1 | Wheat | nucleus | 29.82 | 27.87 |
| KRH70509 | Soybean | nucleus | 28.66 | 27.22 |
| TraesCS1B01G053000.1 | Wheat | nucleus | 29.82 | 26.84 |
| KRH36195 | Soybean | extracellular | 28.66 | 26.49 |
| TraesCS3B01G389400.1 | Wheat | nucleus | 29.82 | 26.02 |
| TraesCS1B01G053200.1 | Wheat | nucleus | 28.66 | 25.93 |
| TraesCS1B01G053100.1 | Wheat | nucleus | 28.07 | 25.4 |
| TraesCS4B01G143400.1 | Wheat | nucleus | 23.98 | 25.31 |
| TraesCS1B01G295400.1 | Wheat | nucleus | 33.92 | 24.47 |
| TraesCS3B01G389000.1 | Wheat | nucleus | 29.24 | 24.04 |
| PGSC0003DMT400060463 | Potato | nucleus | 25.15 | 20.67 |
| TraesCS3B01G389100.1 | Wheat | nucleus | 29.24 | 19.46 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 32.16 | 15.07 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 29.24 | 13.7 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G490800.1 | EnsemblPlantsGene:TraesCS5B01G490800 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF166 | PFAM:PF13912 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr5B:+:659625716..659626231
Molecular Weight (calculated)
18245.6 Da
IEP (calculated)
8.816
GRAVY (calculated)
-0.388
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGMKRARE EEPAVSLALS LSTDSSASTT TSDNSACAPA AAAAAPRKRA RGGRVVVTSG EGEFVCKTCG RAFATFQALG GHRTSHLRGR HGLELGVGVA
101: RAIRERQRRG DKEPHDCHIC GLGFETGQAL GGHMRRHREE MALDRWFAVS DQEAGHQAAA DRLPVLLELF V
101: RAIRERQRRG DKEPHDCHIC GLGFETGQAL GGHMRRHREE MALDRWFAVS DQEAGHQAAA DRLPVLLELF V
001: MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
Arabidopsis Description
At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.