Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G491000.1 | Wheat | nucleus | 88.48 | 90.68 |
| TraesCS5D01G491400.1 | Wheat | nucleus | 85.45 | 83.93 |
| TraesCS5A01G478100.1 | Wheat | nucleus | 85.45 | 83.43 |
| TraesCS5A01G477900.1 | Wheat | nucleus | 83.64 | 81.66 |
| TraesCS5D01G491200.1 | Wheat | nucleus | 80.61 | 81.6 |
| TraesCS5B01G490800.1 | Wheat | nucleus | 81.82 | 78.95 |
| HORVU5Hr1G113090.1 | Barley | nucleus | 81.21 | 77.91 |
| TraesCS5A01G477400.1 | Wheat | nucleus | 79.39 | 74.43 |
| TraesCS5A01G476900.1 | Wheat | nucleus | 76.97 | 72.57 |
| TraesCS5A01G477000.1 | Wheat | nucleus | 78.18 | 72.47 |
| TraesCS5A01G478400.1 | Wheat | nucleus | 67.27 | 70.7 |
| HORVU5Hr1G112970.1 | Barley | nucleus | 81.21 | 70.53 |
| EER93194 | Sorghum | nucleus, plastid | 66.67 | 60.11 |
| Os03t0820300-01 | Rice | nucleus | 61.82 | 60.0 |
| Zm00001d034641_P001 | Maize | nucleus | 61.82 | 58.96 |
| HORVU5Hr1G045760.1 | Barley | nucleus | 81.21 | 58.26 |
| TraesCS5A01G477200.1 | Wheat | mitochondrion, nucleus | 47.27 | 57.78 |
| Zm00001d012968_P001 | Maize | nucleus | 61.21 | 57.71 |
| TraesCS5A01G477100.1 | Wheat | nucleus | 46.06 | 56.3 |
| TraesCS5A01G478200.1 | Wheat | nucleus | 45.45 | 55.56 |
| TraesCS5A01G477500.1 | Wheat | nucleus | 46.06 | 55.47 |
| TraesCS5A01G477600.1 | Wheat | nucleus | 44.85 | 54.41 |
| TraesCS5A01G478000.1 | Wheat | nucleus | 43.03 | 52.99 |
| TraesCS5A01G477800.1 | Wheat | nucleus | 42.42 | 51.09 |
| TraesCS5A01G477300.1 | Wheat | nucleus | 34.55 | 50.44 |
| PGSC0003DMT400060523 | Potato | mitochondrion | 27.27 | 32.61 |
| TraesCS4A01G174100.1 | Wheat | nucleus | 30.3 | 31.85 |
| Solyc05g054650.1.1 | Tomato | plastid | 27.88 | 30.26 |
| VIT_06s0004g04180.t01 | Wine grape | nucleus | 29.09 | 30.19 |
| TraesCS5A01G476500.1 | Wheat | nucleus | 27.27 | 28.48 |
| VIT_13s0019g00480.t01 | Wine grape | nucleus | 30.3 | 28.41 |
| KRG90559 | Soybean | nucleus | 29.7 | 28.32 |
| KRH01600 | Soybean | cytosol, extracellular, nucleus | 29.7 | 28.0 |
| TraesCS1A01G286100.1 | Wheat | nucleus | 30.3 | 27.78 |
| TraesCS4A01G101100.1 | Wheat | nucleus | 32.12 | 27.75 |
| Solyc05g054660.1.1 | Tomato | nucleus, plastid | 27.88 | 27.54 |
| TraesCS4A01G101000.1 | Wheat | nucleus | 30.3 | 27.47 |
| KRH70509 | Soybean | nucleus | 29.7 | 27.22 |
| TraesCS1A01G040100.1 | Wheat | nucleus | 27.88 | 26.9 |
| KRH36195 | Soybean | extracellular | 29.7 | 26.49 |
| TraesCS3A01G356600.1 | Wheat | nucleus | 30.3 | 26.18 |
| TraesCS1A01G040300.1 | Wheat | nucleus | 28.48 | 24.87 |
| TraesCS3A01G356100.1 | Wheat | nucleus | 30.3 | 24.51 |
| TraesCS1A01G040200.1 | Wheat | nucleus | 29.7 | 24.5 |
| TraesCS1A01G285900.1 | Wheat | nucleus | 35.15 | 24.07 |
| PGSC0003DMT400060463 | Potato | nucleus | 25.45 | 20.19 |
| TraesCS3A01G356200.1 | Wheat | nucleus | 29.7 | 19.68 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 34.55 | 16.67 |
| TraesCS6A01G404600.1 | Wheat | nucleus | 30.3 | 13.62 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G478300.1 | EnsemblPlantsGene:TraesCS5A01G478300 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF166 | PFAM:PF13912 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr5A:+:651758950..651759447
Molecular Weight (calculated)
17900.4 Da
IEP (calculated)
10.461
GRAVY (calculated)
-0.498
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGMKHARE EEVLSLALAL RTDSSTSSAD SAGAPARKRA RRGRVVATSG EGEFVCKTCG RAFTTFQALG GHRTSHLRGR HGLELGVGVA RAIKERQRQE
101: DKQQHDCHIC GLGFETGQAL GGHMRRHRKE MALSGAIDRW VALSEQETGH QAAAHRPPVL LELFV
101: DKQQHDCHIC GLGFETGQAL GGHMRRHRKE MALSGAIDRW VALSEQETGH QAAAHRPPVL LELFV
001: MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
Arabidopsis Description
At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.