Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G477000.1 | Wheat | nucleus | 81.14 | 79.78 |
| TraesCS5A01G478300.1 | Wheat | nucleus | 72.57 | 76.97 |
| TraesCS5A01G478100.1 | Wheat | nucleus | 69.14 | 71.6 |
| HORVU5Hr1G112900.1 | Barley | nucleus | 73.14 | 69.95 |
| TraesCS5A01G477400.1 | Wheat | nucleus | 69.14 | 68.75 |
| TraesCS5A01G477900.1 | Wheat | nucleus | 66.29 | 68.64 |
| TraesCS5A01G478400.1 | Wheat | nucleus | 59.43 | 66.24 |
| Zm00001d034641_P001 | Maize | nucleus | 59.43 | 60.12 |
| EER93194 | Sorghum | nucleus, plastid | 61.71 | 59.02 |
| Zm00001d012968_P001 | Maize | nucleus | 57.14 | 57.14 |
| Os03t0820300-01 | Rice | nucleus | 54.86 | 56.47 |
| TraesCS5A01G478200.1 | Wheat | nucleus | 40.57 | 52.59 |
| TraesCS5A01G477200.1 | Wheat | mitochondrion, nucleus | 40.57 | 52.59 |
| TraesCS5A01G477500.1 | Wheat | nucleus | 41.14 | 52.55 |
| TraesCS5A01G477100.1 | Wheat | nucleus | 40.0 | 51.85 |
| TraesCS5A01G477600.1 | Wheat | nucleus | 40.0 | 51.47 |
| TraesCS5A01G478000.1 | Wheat | nucleus | 38.86 | 50.75 |
| TraesCS5A01G477800.1 | Wheat | nucleus | 39.43 | 50.37 |
| TraesCS5A01G477300.1 | Wheat | nucleus | 30.29 | 46.9 |
| PGSC0003DMT400060523 | Potato | mitochondrion | 26.29 | 33.33 |
| VIT_06s0004g04180.t01 | Wine grape | nucleus | 28.57 | 31.45 |
| Solyc05g054650.1.1 | Tomato | plastid | 26.86 | 30.92 |
| KRG90559 | Soybean | nucleus | 30.29 | 30.64 |
| TraesCS4A01G174100.1 | Wheat | nucleus | 27.43 | 30.57 |
| TraesCS5A01G476500.1 | Wheat | nucleus | 27.43 | 30.38 |
| KRH01600 | Soybean | cytosol, extracellular, nucleus | 29.14 | 29.14 |
| VIT_13s0019g00480.t01 | Wine grape | nucleus | 29.14 | 28.98 |
| TraesCS1A01G286100.1 | Wheat | nucleus | 29.71 | 28.89 |
| KRH70509 | Soybean | nucleus | 29.14 | 28.33 |
| Solyc05g054660.1.1 | Tomato | nucleus, plastid | 26.86 | 28.14 |
| TraesCS4A01G101000.1 | Wheat | nucleus | 29.14 | 28.02 |
| TraesCS4A01G101100.1 | Wheat | nucleus | 30.29 | 27.75 |
| TraesCS3A01G356600.1 | Wheat | nucleus | 30.29 | 27.75 |
| KRH36195 | Soybean | extracellular | 29.14 | 27.57 |
| TraesCS1A01G040100.1 | Wheat | nucleus | 26.29 | 26.9 |
| TraesCS3A01G356100.1 | Wheat | nucleus | 29.71 | 25.49 |
| TraesCS1A01G285900.1 | Wheat | nucleus | 34.86 | 25.31 |
| TraesCS1A01G040300.1 | Wheat | nucleus | 26.86 | 24.87 |
| TraesCS1A01G040200.1 | Wheat | nucleus | 28.0 | 24.5 |
| PGSC0003DMT400060463 | Potato | nucleus | 24.57 | 20.67 |
| TraesCS3A01G356200.1 | Wheat | nucleus | 29.14 | 20.48 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 32.57 | 16.67 |
| TraesCS6A01G404600.1 | Wheat | nucleus | 29.71 | 14.17 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G476900.1 | EnsemblPlantsGene:TraesCS5A01G476900 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF166 |
| PFAM:PF13912 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:651517472..651528387
Molecular Weight (calculated)
19275.0 Da
IEP (calculated)
10.900
GRAVY (calculated)
-0.713
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRTRNKEVL SLALALTTDS STSSTTSADS AGSPAKKARR RERGAMVATS GEGEFVCNTC GRAFASFQAL GGHRTSHLRG RHELELGVGI ARAIRERRRR
101: ENKQHEAIKE RKKQRHECHI CGLGFEMGQA LGGHMRRHRE EMALSGANDR RVADQDVAGH HAAADQPPVL LELFV
101: ENKQHEAIKE RKKQRHECHI CGLGFEMGQA LGGHMRRHRE EMALSGANDR RVADQDVAGH HAAADQPPVL LELFV
001: MVAISEIKST VDVTAANCLM LLSRVGQENV DGGDQKRVFT CKTCLKQFHS FQALGGHRAS HKKPNNDALS SGLMKKVKTS SHPCPICGVE FPMGQALGGH
101: MRRHRNESGA AGGALVTRAL LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY
101: MRRHRNESGA AGGALVTRAL LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY
Arabidopsis Description
ZAT12Zinc finger protein ZAT12 [Source:UniProtKB/Swiss-Prot;Acc:Q42410]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.