Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G477200.1 | Wheat | mitochondrion, nucleus | 91.15 | 76.3 |
| TraesCS5D01G490800.1 | Wheat | nucleus | 87.61 | 74.44 |
| TraesCS5B01G490500.1 | Wheat | nucleus | 81.42 | 68.66 |
| TraesCS5A01G477100.1 | Wheat | nucleus | 77.88 | 65.19 |
| TraesCS5A01G478200.1 | Wheat | nucleus | 57.52 | 48.15 |
| Os03t0820400-01 | Rice | nucleus | 61.06 | 47.92 |
| TraesCS5A01G478000.1 | Wheat | nucleus | 56.64 | 47.76 |
| TraesCS5A01G477600.1 | Wheat | nucleus | 56.64 | 47.06 |
| TraesCS5A01G477500.1 | Wheat | nucleus | 56.64 | 46.72 |
| TraesCS5A01G477800.1 | Wheat | nucleus | 56.64 | 46.72 |
| TraesCS5A01G478400.1 | Wheat | nucleus | 51.33 | 36.94 |
| TraesCS5A01G477900.1 | Wheat | nucleus | 52.21 | 34.91 |
| TraesCS5A01G478300.1 | Wheat | nucleus | 50.44 | 34.55 |
| TraesCS5A01G478100.1 | Wheat | nucleus | 51.33 | 34.32 |
| TraesCS5A01G477400.1 | Wheat | nucleus | 51.33 | 32.95 |
| TraesCS5A01G476900.1 | Wheat | nucleus | 46.9 | 30.29 |
| TraesCS5A01G477000.1 | Wheat | nucleus | 46.9 | 29.78 |
| TraesCS4A01G174100.1 | Wheat | nucleus | 36.28 | 26.11 |
| PGSC0003DMT400060523 | Potato | mitochondrion | 26.55 | 21.74 |
| Solyc05g054650.1.1 | Tomato | plastid | 28.32 | 21.05 |
| VIT_06s0004g04180.t01 | Wine grape | nucleus | 28.32 | 20.13 |
| TraesCS5A01G476500.1 | Wheat | nucleus | 27.43 | 19.62 |
| Solyc05g054660.1.1 | Tomato | nucleus, plastid | 28.32 | 19.16 |
| TraesCS3A01G356600.1 | Wheat | nucleus | 31.86 | 18.85 |
| TraesCS4A01G101100.1 | Wheat | nucleus | 30.97 | 18.32 |
| VIT_13s0019g00480.t01 | Wine grape | nucleus | 28.32 | 18.18 |
| KRG90559 | Soybean | nucleus | 27.43 | 17.92 |
| TraesCS1A01G286100.1 | Wheat | nucleus | 28.32 | 17.78 |
| TraesCS4A01G101000.1 | Wheat | nucleus | 28.32 | 17.58 |
| KRH36195 | Soybean | extracellular | 28.32 | 17.3 |
| TraesCS3A01G356100.1 | Wheat | nucleus | 30.97 | 17.16 |
| KRH01600 | Soybean | cytosol, extracellular, nucleus | 26.55 | 17.14 |
| TraesCS1A01G040100.1 | Wheat | nucleus | 25.66 | 16.96 |
| TraesCS1A01G040300.1 | Wheat | nucleus | 28.32 | 16.93 |
| KRH70509 | Soybean | nucleus | 26.55 | 16.67 |
| TraesCS1A01G285900.1 | Wheat | nucleus | 35.4 | 16.6 |
| TraesCS1A01G040200.1 | Wheat | nucleus | 27.43 | 15.5 |
| PGSC0003DMT400060463 | Potato | nucleus | 26.55 | 14.42 |
| TraesCS3A01G356200.1 | Wheat | nucleus | 30.97 | 14.06 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 30.09 | 9.94 |
| TraesCS6A01G404600.1 | Wheat | nucleus | 29.2 | 8.99 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G477300.1 | EnsemblPlantsGene:TraesCS5A01G477300 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF169 | PFAM:PF13912 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr5A:-:651569282..651569677
Molecular Weight (calculated)
12143.7 Da
IEP (calculated)
9.436
GRAVY (calculated)
-0.265
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKHQRAAAD QAVSLSLSLS LGAVAGLNKK MRRAAAAAGG DQFLCKTCGR CHGLTLALTA GDHYYSVKPK STDQKPEHRC HICGQGFEMG QALGGHMRRH
101: REEAAPVLLE LFV
101: REEAAPVLLE LFV
001: MVAISEIKST VDVTAANCLM LLSRVGQENV DGGDQKRVFT CKTCLKQFHS FQALGGHRAS HKKPNNDALS SGLMKKVKTS SHPCPICGVE FPMGQALGGH
101: MRRHRNESGA AGGALVTRAL LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY
101: MRRHRNESGA AGGALVTRAL LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY
Arabidopsis Description
ZAT12Zinc finger protein ZAT12 [Source:UniProtKB/Swiss-Prot;Acc:Q42410]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.