Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G387900.1 | Wheat | nucleus | 95.1 | 95.36 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 94.01 | 94.52 |
| HORVU6Hr1G092750.1 | Barley | nucleus | 90.46 | 91.97 |
| Os02t0823900-00 | Rice | cytosol, nucleus, peroxisome | 63.49 | 67.73 |
| Zm00001d051865_P001 | Maize | nucleus | 52.86 | 58.79 |
| GSMUA_Achr8P12900_001 | Banana | nucleus | 29.97 | 54.46 |
| EES07783 | Sorghum | nucleus | 57.22 | 53.71 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.07 | 44.98 |
| VIT_06s0061g00760.t01 | Wine grape | nucleus | 31.88 | 40.48 |
| VIT_08s0007g04770.t01 | Wine grape | nucleus | 29.97 | 39.86 |
| KRH67769 | Soybean | nucleus | 22.89 | 38.89 |
| KRG92135 | Soybean | nucleus | 34.6 | 38.84 |
| CDY11027 | Canola | nucleus | 23.98 | 38.1 |
| TraesCS5A01G476500.1 | Wheat | nucleus | 16.35 | 37.97 |
| PGSC0003DMT400009871 | Potato | nucleus | 29.7 | 36.58 |
| TraesCS1A01G040300.1 | Wheat | nucleus | 18.53 | 35.98 |
| KRH19960 | Soybean | nucleus | 27.79 | 35.42 |
| TraesCS5A01G478000.1 | Wheat | nucleus | 12.81 | 35.07 |
| PGSC0003DMT400001104 | Potato | nucleus | 27.79 | 35.05 |
| TraesCS5A01G477500.1 | Wheat | nucleus | 13.08 | 35.04 |
| TraesCS5A01G477200.1 | Wheat | mitochondrion, nucleus | 12.81 | 34.81 |
| VIT_13s0019g05170.t01 | Wine grape | nucleus | 28.61 | 34.77 |
| CDY04886 | Canola | nucleus | 25.34 | 34.7 |
| Bra028831.1-P | Field mustard | nucleus | 25.34 | 34.7 |
| CDY71034 | Canola | nucleus | 23.16 | 34.69 |
| CDX80870 | Canola | nucleus | 23.98 | 34.65 |
| KRH32562 | Soybean | nucleus | 28.07 | 34.56 |
| TraesCS5A01G477600.1 | Wheat | nucleus | 12.81 | 34.56 |
| CDY41350 | Canola | nucleus, plastid | 23.71 | 34.52 |
| Solyc09g008440.1.1 | Tomato | nucleus | 29.16 | 34.52 |
| TraesCS1A01G286100.1 | Wheat | nucleus | 16.89 | 34.44 |
| KRH30555 | Soybean | nucleus | 28.88 | 34.42 |
| Solyc06g074800.1.1 | Tomato | nucleus | 30.52 | 34.36 |
| TraesCS3A01G356100.1 | Wheat | nucleus | 19.07 | 34.31 |
| KRH34655 | Soybean | nucleus | 33.24 | 34.27 |
| CDY11255 | Canola | nucleus | 23.71 | 34.25 |
| TraesCS5A01G478200.1 | Wheat | nucleus | 12.53 | 34.07 |
| TraesCS4A01G101000.1 | Wheat | nucleus | 16.89 | 34.07 |
| PGSC0003DMT400018457 | Potato | nucleus | 30.52 | 34.04 |
| Solyc11g066400.1.1 | Tomato | nucleus, plastid | 27.25 | 34.01 |
| CDY10376 | Canola | nucleus | 24.52 | 33.96 |
| Bra009525.1-P | Field mustard | nucleus | 24.52 | 33.96 |
| CDX70302 | Canola | nucleus | 24.52 | 33.96 |
| CDY44371 | Canola | nucleus | 24.8 | 33.96 |
| KRH25111 | Soybean | nucleus, plastid | 28.61 | 33.33 |
| TraesCS1A01G040100.1 | Wheat | nucleus | 15.53 | 33.33 |
| AT5G03510.1 | Thale cress | nucleus | 26.43 | 33.22 |
| Bra034116.1-P | Field mustard | plastid | 25.07 | 33.09 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 30.79 | 33.04 |
| TraesCS1A01G040200.1 | Wheat | nucleus | 17.98 | 33.0 |
| TraesCS5A01G477800.1 | Wheat | nucleus | 12.26 | 32.85 |
| TraesCS5A01G477100.1 | Wheat | nucleus | 11.99 | 32.59 |
| TraesCS4A01G101100.1 | Wheat | nucleus | 16.89 | 32.46 |
| CDX70228 | Canola | nucleus | 28.34 | 32.1 |
| KRH22825 | Soybean | nucleus | 27.52 | 32.06 |
| CDY44852 | Canola | nucleus | 28.34 | 32.0 |
| Bra005766.1-P | Field mustard | nucleus | 23.98 | 31.88 |
| CDY11288 | Canola | nucleus | 28.34 | 31.61 |
| CDY61764 | Canola | nucleus | 29.16 | 31.47 |
| KRH26537 | Soybean | nucleus, plastid | 26.7 | 31.31 |
| AT5G04390.1 | Thale cress | nucleus | 30.52 | 30.94 |
| TraesCS5A01G477000.1 | Wheat | nucleus | 14.99 | 30.9 |
| CDY58436 | Canola | nucleus | 28.61 | 30.88 |
| Bra009457.1-P | Field mustard | nucleus | 28.88 | 30.72 |
| TraesCS5A01G478400.1 | Wheat | nucleus | 13.08 | 30.57 |
| TraesCS3A01G356600.1 | Wheat | nucleus | 15.8 | 30.37 |
| Bra005803.1-P | Field mustard | nucleus | 29.7 | 30.36 |
| TraesCS5A01G478300.1 | Wheat | nucleus | 13.62 | 30.3 |
| CDY08602 | Canola | nucleus | 27.79 | 30.18 |
| TraesCS4A01G174100.1 | Wheat | nucleus | 12.81 | 29.94 |
| CDY00945 | Canola | nucleus | 27.52 | 29.88 |
| TraesCS5A01G476900.1 | Wheat | nucleus | 14.17 | 29.71 |
| TraesCS5A01G477900.1 | Wheat | nucleus | 13.62 | 29.59 |
| Bra028791.1-P | Field mustard | nucleus | 28.34 | 29.55 |
| Bra029843.1-P | Field mustard | nucleus | 26.16 | 29.54 |
| TraesCS5A01G477300.1 | Wheat | nucleus | 8.99 | 29.2 |
| TraesCS5A01G478100.1 | Wheat | nucleus | 13.35 | 28.99 |
| TraesCS5A01G477400.1 | Wheat | nucleus | 13.62 | 28.41 |
| Solyc05g055500.1.1 | Tomato | nucleus | 27.79 | 28.18 |
| KRG96047 | Soybean | mitochondrion | 27.52 | 27.98 |
| AT3G10470.1 | Thale cress | nucleus | 30.25 | 27.89 |
| TraesCS3A01G356200.1 | Wheat | nucleus | 18.53 | 27.31 |
| PGSC0003DMT400079773 | Potato | nucleus | 26.7 | 26.63 |
| CDX89591 | Canola | nucleus | 13.62 | 24.04 |
| CDY42128 | Canola | nucleus | 13.62 | 22.42 |
| TraesCS1A01G285900.1 | Wheat | nucleus | 14.17 | 21.58 |
| CDY05027 | Canola | nucleus | 9.26 | 20.36 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G404600.1 | EnsemblPlantsGene:TraesCS6A01G404600 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF329 | PFAM:PF13912 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr6A:+:611197204..611198714
Molecular Weight (calculated)
38179.3 Da
IEP (calculated)
8.423
GRAVY (calculated)
-0.322
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MQASAMELVL FREEGAVDDR LQQRGGAVVK RKRTKRPRHQ TPPVAAMACS SASSSESTTT EEEDMAHCLI LLAQGAAPPG VVVDSRPPPA TVPQEARQGT
101: SSLPPAGPLP APAVVSAKTE RYTSRKYTEA ATTADGVRAG FYVYECKTCN KCFPTFQALG GHRASHKKPR LAGADDDSAA NATSVAIAKL SKPPSTKTAT
201: PPLVQMTTAS PPPPPPPQVD AAPDVTTVLS LNNGGSAVCH AVNTNRLRVH ECSICGAEFA SGQALGGHMR RHRPLHAPAD RAIATTAVTA IAASTTKKEK
301: DSTPAGINLE LDLNLPAPSD EECVSHPPPP PPPSSAPPVV LGLGPFDSGK KRLMLTAASA ALVDCHY
101: SSLPPAGPLP APAVVSAKTE RYTSRKYTEA ATTADGVRAG FYVYECKTCN KCFPTFQALG GHRASHKKPR LAGADDDSAA NATSVAIAKL SKPPSTKTAT
201: PPLVQMTTAS PPPPPPPQVD AAPDVTTVLS LNNGGSAVCH AVNTNRLRVH ECSICGAEFA SGQALGGHMR RHRPLHAPAD RAIATTAVTA IAASTTKKEK
301: DSTPAGINLE LDLNLPAPSD EECVSHPPPP PPPSSAPPVV LGLGPFDSGK KRLMLTAASA ALVDCHY
001: MEAFEEATKE QSLILKGKRT KRQRPQSPIP FSISPPIVST PENNMEEEYT DLDSKDNALG NDEGNHKKDG VITSSSSSAS WSSQNNHTLK AAEDEEDQDI
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84K31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.