Factsheet for Solyc05g055500.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079773	Potato	nucleus	50.55	49.73
HORVU3Hr1G057300.1	Barley	nucleus	8.84	46.38
HORVU4Hr1G082500.1	Barley	nucleus	8.84	46.38
HORVU5Hr1G095320.1	Barley	nucleus	8.84	46.38
HORVU1Hr1G012760.1	Barley	nucleus	8.56	44.93
HORVU2Hr1G122100.1	Barley	nucleus, plastid	9.12	42.86
Solyc05g054650.1.1	Tomato	plastid	17.4	41.45
Solyc11g073060.1.1	Tomato	nucleus	17.4	40.91
VIT_13s0019g05170.t01	Wine grape	nucleus	33.98	40.73
HORVU1Hr1G020710.1	Barley	nucleus	8.56	40.26
HORVU5Hr1G095330.1	Barley	nucleus	8.29	38.96
HORVU5Hr1G095390.1	Barley	nucleus	8.29	38.96
Solyc05g054660.1.1	Tomato	nucleus, plastid	17.68	38.32
Solyc11g066400.1.1	Tomato	nucleus, plastid	30.94	38.1
Solyc06g075780.1.1	Tomato	nucleus	15.75	37.01
Solyc09g008440.1.1	Tomato	nucleus	29.83	34.84
Solyc06g074800.1.1	Tomato	nucleus	30.94	34.36
Zm00001d036330_P001	Maize	nucleus	23.2	34.15
Zm00001d051865_P001	Maize	nucleus	27.9	30.61
KXG20985	Sorghum	nucleus, plastid	22.38	29.45
Os04t0162500-01	Rice	vacuole	23.48	29.41
Os02t0823900-00	Rice	cytosol, nucleus, peroxisome	27.07	28.49
Zm00001d024866_P001	Maize	nucleus	28.18	27.87
TraesCS6A01G404600.1	Wheat	nucleus	28.18	27.79
TraesCS2A01G002400.1	Wheat	nucleus	26.24	27.78
Zm00001d004439_P001	Maize	nucleus	27.35	27.58
HORVU6Hr1G092750.1	Barley	nucleus	27.35	27.42
TraesCS6B01G448900.1	Wheat	nucleus	27.62	27.4
TraesCS6D01G387900.1	Wheat	nucleus	27.62	27.32
EES10410	Sorghum	nucleus	29.83	26.93
Solyc03g093870.1.1	Tomato	nucleus	12.71	26.44
TraesCS2B01G020300.1	Wheat	nucleus	26.24	26.03
EES07783	Sorghum	nucleus	27.07	25.06

Protein Annotations

EnsemblPlants:Solyc05g055500.1.1	EnsemblPlantsGene:Solyc05g055500.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
PANTHER:PTHR26374	PANTHER:PTHR26374:SF308	PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000276723E	UniProt:K4C2M6	MapMan:15.5.15	:

Description

No Description!

Coordinates

chr5:-:65122550..65123638

Molecular Weight (calculated)

40785.2 Da

IEP (calculated)

7.184

GRAVY (calculated)

-1.040

Length

362 amino acids

Sequence
(BLAST)

001: MEAPQEEVMG GVSKGKRTKR VRPQSLITFM TINNAHSSLT GDTNVDGTVN GEEVNDDDNN NNNDSSPPCT TSGKNFLDDD DVPTEEEEET AKCLILLSQG
101: GHHHHHRRQT PPKKFFDLFN DDMGLYQTKF NSKRYVETTD LGNGAKVGTY VYECKTCNRT FSSFQALGGH RASHKKPKPL TIEPKKHPFF YFSDQDELSP
201: PPATTTPTNY KYNNKLSPTL SPLSSQFNNI NMESSPNYNK SQSPRIHKCS YCGAEFTSGQ ALGGHMRRHR GGANINNTIL CLSPLSIDQE YANYNLKKPR
301: NGLSLDLNLP APQDYQNQSR NLQHPPKYPQ EQAQKQQQEQ QQEQQQTTLV LSTTPQLIDC HY

Best Arabidopsis Sequence Match ( AT5G04390.1 )
(BLAST)

001: MEAFEEATKE QSLILKGKRT KRQRPQSPIP FSISPPIVST PENNMEEEYT DLDSKDNALG NDEGNHKKDG VITSSSSSAS WSSQNNHTLK AAEDEEDQDI
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY

Arabidopsis Description

C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84K31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.