Factsheet for VIT_13s0019g05170.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G057300.1	Barley	nucleus	10.93	47.83
VIT_06s0004g04180.t01	Wine grape	nucleus	24.83	47.17
VIT_08s0007g04770.t01	Wine grape	nucleus	42.72	46.74
HORVU5Hr1G095320.1	Barley	nucleus	10.6	46.38
VIT_06s0061g00760.t01	Wine grape	nucleus	44.04	46.02
HORVU2Hr1G122100.1	Barley	nucleus, plastid	11.59	45.45
HORVU4Hr1G082500.1	Barley	nucleus	10.26	44.93
VIT_13s0019g00480.t01	Wine grape	nucleus	25.5	43.75
HORVU1Hr1G012760.1	Barley	nucleus	9.93	43.48
HORVU1Hr1G020710.1	Barley	nucleus	10.26	40.26
HORVU5Hr1G095330.1	Barley	nucleus	9.93	38.96
HORVU5Hr1G095390.1	Barley	nucleus	9.93	38.96
Zm00001d036330_P001	Maize	nucleus	29.47	36.18
Solyc05g055500.1.1	Tomato	nucleus	40.73	33.98
Zm00001d051865_P001	Maize	nucleus	36.09	33.03
KXG20985	Sorghum	nucleus, plastid	29.47	32.36
Zm00001d004439_P001	Maize	nucleus	38.41	32.31
Os02t0823900-00	Rice	cytosol, nucleus, peroxisome	36.76	32.27
Os04t0162500-01	Rice	vacuole	30.13	31.49
Zm00001d024866_P001	Maize	nucleus	38.08	31.42
PGSC0003DMT400079773	Potato	nucleus	38.08	31.25
TraesCS2A01G002400.1	Wheat	nucleus	33.44	29.53
HORVU6Hr1G092750.1	Barley	nucleus	34.77	29.09
TraesCS6B01G448900.1	Wheat	nucleus	34.77	28.77
TraesCS2B01G020300.1	Wheat	nucleus	34.77	28.77
TraesCS6D01G387900.1	Wheat	nucleus	34.77	28.69
EES10410	Sorghum	nucleus	38.08	28.68
TraesCS6A01G404600.1	Wheat	nucleus	34.77	28.61
EES07783	Sorghum	nucleus	36.76	28.39

Protein Annotations

EntrezGene:100254652	wikigene:100254652	MapMan:15.5.15	UniProt:A5AIY0	EMBL:AM427787	ProteinID:CAN69085
ProteinID:CAN69085.1	ProteinID:CCB56135	ProteinID:CCB56135.1	EMBL:FN595998	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087
EntrezGene:LOC100254652	wikigene:LOC100254652	PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374
PANTHER:PTHR26374:SF325	SMART:SM00355	SUPFAM:SSF57667	TIGR:TC65197	UniParc:UPI000151EE44	ArrayExpress:VIT_13s0019g05170
EnsemblPlantsGene:VIT_13s0019g05170	EnsemblPlants:VIT_13s0019g05170.t01	unigene:Vvi.12012	RefSeq:XP_002265877	RefSeq:XP_002265877.1	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:7002683..7004162

Molecular Weight (calculated)

33187.7 Da

IEP (calculated)

6.433

GRAVY (calculated)

-0.763

Length

302 amino acids

Sequence
(BLAST)

001: MEAQDEYAHI VKGKRTKRLR PHSPLPFPIP TNSSTAEGGD SSGGDDSNLM HIITNSNSAS SPANSFDLFQ QDSSEEDEDL ANCLILLAQG QSREESKVED
101: GGGSVAAAAT ATAKAGFYAY ECKTCNRTFP SFQALGGHRA SHKKPKAFME EKKIFGFLEE EESQLKPLTL QLSSRAFNSS SSKSRIHECS ICGAEFTSGQ
201: ALGGHMRRHR APIPIPSTNT TLSLNPLPGC LEPEQAKRPR TLLSLDLDLN LPAPEDDHNH PREPKFSFTP KQQQQQQQQQ QQQQQQPSPL MFPAPTLVDC
301: HY

Best Arabidopsis Sequence Match ( AT5G04390.1 )
(BLAST)

001: MEAFEEATKE QSLILKGKRT KRQRPQSPIP FSISPPIVST PENNMEEEYT DLDSKDNALG NDEGNHKKDG VITSSSSSAS WSSQNNHTLK AAEDEEDQDI
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY

Arabidopsis Description

C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84K31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.