CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036330_P001	Maize	nucleus	66.91	74.8
GSMUA_Achr1P06720_001	Banana	nucleus	26.18	47.68
EER90627	Sorghum	cytosol, mitochondrion, nucleus	22.18	41.78
KRH67769	Soybean	nucleus	28.0	35.65
CDY11027	Canola	nucleus	29.82	35.5
VIT_08s0007g04770.t01	Wine grape	nucleus	35.27	35.14
VIT_06s0061g00760.t01	Wine grape	nucleus	36.36	34.6
EER93193	Sorghum	cytosol, nucleus, plastid	18.18	33.56
CDX80870	Canola	nucleus	30.55	33.07
CDY11255	Canola	nucleus	30.55	33.07
Bra028831.1-P	Field mustard	nucleus	31.64	32.46
CDY04886	Canola	nucleus	31.64	32.46
Bra009525.1-P	Field mustard	nucleus	31.27	32.45
CDX70302	Canola	nucleus	31.27	32.45
Bra005766.1-P	Field mustard	nucleus	32.36	32.25
CDY44371	Canola	nucleus	31.27	32.09
CDY10376	Canola	nucleus	30.91	32.08
CDY41350	Canola	nucleus, plastid	29.09	31.75
KRH19960	Soybean	nucleus	33.09	31.6
AT5G03510.1	Thale cress	nucleus	33.45	31.51
PGSC0003DMT400001104	Potato	nucleus	33.09	31.27
EER92453	Sorghum	nucleus	22.18	30.96
PGSC0003DMT400009871	Potato	nucleus	33.45	30.87
Solyc11g066400.1.1	Tomato	nucleus, plastid	32.73	30.61
KRG92135	Soybean	nucleus	36.36	30.58
KRH32562	Soybean	nucleus	33.09	30.54
CDY71034	Canola	nucleus	26.91	30.2
EES03852	Sorghum	cytosol	25.09	29.87
KXG21109	Sorghum	nucleus	21.82	29.7
Solyc09g008440.1.1	Tomato	nucleus	33.45	29.68
PGSC0003DMT400018457	Potato	nucleus	35.27	29.48
VIT_13s0019g05170.t01	Wine grape	nucleus	32.36	29.47
Bra034116.1-P	Field mustard	plastid	29.45	29.14
OQU87825	Sorghum	nucleus	19.64	29.03
EER93194	Sorghum	nucleus, plastid	19.27	28.96
Solyc06g074800.1.1	Tomato	nucleus	34.18	28.83
KRH26537	Soybean	nucleus, plastid	32.73	28.75
KRH30555	Soybean	nucleus	32.0	28.57
KRH25111	Soybean	nucleus, plastid	32.73	28.57
KRH22825	Soybean	nucleus	32.73	28.57
CDY44852	Canola	nucleus	32.73	27.69
KRH34655	Soybean	nucleus	35.64	27.53
CDX70228	Canola	nucleus	32.36	27.47
EES07783	Sorghum	nucleus	38.55	27.11
CDY11288	Canola	nucleus	31.64	26.44
CDY58436	Canola	nucleus	32.36	26.18
Bra009457.1-P	Field mustard	nucleus	32.36	25.8
CDY08602	Canola	nucleus	31.64	25.74
AT5G04390.1	Thale cress	nucleus	33.82	25.69
CDY61764	Canola	nucleus	31.64	25.59
KRG96047	Soybean	mitochondrion	33.45	25.48
CDY00945	Canola	nucleus	31.27	25.44
EES10296	Sorghum	plastid	16.73	25.14
Bra029843.1-P	Field mustard	nucleus	29.45	24.92
EES18355	Sorghum	nucleus	18.91	24.88
Bra005803.1-P	Field mustard	nucleus	32.0	24.51
Bra028791.1-P	Field mustard	nucleus	30.91	24.15
EES10410	Sorghum	nucleus	34.91	23.94
AT3G10470.1	Thale cress	nucleus	33.82	23.37
PGSC0003DMT400079773	Potato	nucleus	30.18	22.55
Solyc05g055500.1.1	Tomato	nucleus	29.45	22.38
CDX89591	Canola	nucleus	16.0	21.15
OQU84076	Sorghum	nucleus	17.09	20.52
CDY42128	Canola	nucleus	15.64	19.28
CDY05027	Canola	nucleus	10.91	17.96

Protein Annotations

EnsemblPlants:KXG20985	EnsemblPlantsGene:SORBI_3010G279600	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF329	PFAM:PF13912	PFscan:PS50157
ProteinID:KXG20985	ProteinID:KXG20985.1	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI0003C6CA86	UniProt:A0A194YLY8	MapMan:15.5.15	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:61192817..61193729

Molecular Weight (calculated)

28613.5 Da

IEP (calculated)

8.583

GRAVY (calculated)

-0.494

Length

275 amino acids

Sequence
(BLAST)

001: MSVPDYSTST GGAIIVSCAS VAKLKPQRNS KRRRHHCSSP AASSSSSHSS STTTQKEEEE DEDMARCLIL LAQGPPAAAA VEPARVMPAP APPSRPKSTS
101: RRAAAEAGGG VCVSYECKTC NKCFPSFQAL GGHRTSHNND KKQQPPPPRR PEEAAAAAVT TTLSLRTAAA ATRPAHECSS CGAVFASGQA LGGHMRRHRP
201: LTTSSSAAAA PESVVTATGT TGDQDSSKLL QEGNINLELD LNLLPAPSTE QEVTSPAKPP CHAPAVQLMH ALTRH

Best Arabidopsis Sequence Match ( AT5G03510.1 )
(BLAST)

001: MTSVLEESGD HARLVLLIKG KRTKRQRSAS PLMMNAAAVS SVCSGERSSV EVREEEAAGE VEFQGATDED EDMANCLILL SQGHQAKSSD DHLSMQRMGF
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH

Arabidopsis Description

C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LZD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.