CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012967_P001	Maize	plastid	71.14	84.13
Zm00001d034642_P001	Maize	nucleus, plastid	76.51	78.62
TraesCS5D01G491100.1	Wheat	nucleus	61.07	67.41
TraesCS5A01G478000.1	Wheat	nucleus	59.73	66.42
TraesCS5B01G490700.1	Wheat	nucleus	60.4	66.18
TraesCS5B01G490900.1	Wheat	nucleus	60.4	65.69
TraesCS5A01G477600.1	Wheat	nucleus	59.73	65.44
TraesCS5A01G477500.1	Wheat	nucleus	59.73	64.96
TraesCS5A01G477800.1	Wheat	nucleus	59.73	64.96
TraesCS5D01G491300.1	Wheat	nucleus	57.72	64.66
TraesCS5A01G478200.1	Wheat	nucleus	58.39	64.44
HORVU5Hr1G112940.1	Barley	nucleus	57.05	62.04
TraesCS5B01G491100.1	Wheat	nucleus	56.38	61.76
HORVU6Hr1G052990.1	Barley	cytosol, mitochondrion, nucleus	30.87	50.55
EER93194	Sorghum	nucleus, plastid	54.36	44.26
HORVU5Hr1G112930.1	Barley	nucleus	61.07	42.13
PGSC0003DMT400060523	Potato	mitochondrion	28.86	31.16
EER90627	Sorghum	cytosol, mitochondrion, nucleus	29.53	30.14
EES10296	Sorghum	plastid	36.91	30.05
Solyc05g054650.1.1	Tomato	plastid	29.53	28.95
VIT_06s0004g04180.t01	Wine grape	nucleus	30.87	28.93
Solyc05g054660.1.1	Tomato	nucleus, plastid	29.53	26.35
OQU87825	Sorghum	nucleus	32.89	26.34
KRG90559	Soybean	nucleus	30.2	26.01
VIT_13s0019g00480.t01	Wine grape	nucleus	29.53	25.0
KRH01600	Soybean	cytosol, extracellular, nucleus	28.86	24.57
KRH36195	Soybean	extracellular	30.2	24.32
KRH70509	Soybean	nucleus	28.86	23.89
OQU84076	Sorghum	nucleus	36.24	23.58
EER92453	Sorghum	nucleus	29.53	22.34
KXG21109	Sorghum	nucleus	30.2	22.28
EES03852	Sorghum	cytosol	34.23	22.08
EES18355	Sorghum	nucleus	30.87	22.01
PGSC0003DMT400060463	Potato	nucleus	28.19	20.19
KXG20985	Sorghum	nucleus, plastid	33.56	18.18
EES10410	Sorghum	nucleus	33.56	12.47
EES07783	Sorghum	nucleus	30.87	11.76

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:8057368	UniProt:C5WV17	EnsemblPlants:EER93193	ProteinID:EER93193
ProteinID:EER93193.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR26374	PANTHER:PTHR26374:SF169	SMART:SM00355	EnsemblPlantsGene:SORBI_3001G035000	SUPFAM:SSF57667	unigene:Sbi.11887
UniParc:UPI0001A82980	RefSeq:XP_002466195.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:2638605..2639439

Molecular Weight (calculated)

15138.1 Da

IEP (calculated)

10.483

GRAVY (calculated)

-0.251

Length

149 amino acids

Sequence
(BLAST)

001: MAKHPRDSGA GAVPLSLALS LGGGGVAAEH GSNKRHRRAA AGGGDGGGEF VCKTCSRAFG SFQALGGHRT SHLRGRHGLA LGMPAPAKDD AKETTTKQPA
101: AASASHLCHV CGLSFEMGQA LGGHMRRHRE EAAAATTAQA PPVLLQLFV

Best Arabidopsis Sequence Match ( AT3G46070.1 )
(BLAST)

001: MVAESDNRDL TVDTAASCLM LLSGIGEHDG RKKRVFRCKT CERDFDSFQA LGGHRASHSK LTNSDDKSLP GSPKKKPKTT TTTTAHTCPI CGLEFPMGQA
101: LGGHMRKHRN EKEREKASNV LVTHSFMPET TTVTTLKKSS SGKRVACLDF DLTSVESFVN TELELGRTMY

Arabidopsis Description

C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LX86]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.