CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045211_P001	Maize	nucleus	67.21	69.1
TraesCS4A01G174100.1	Wheat	nucleus	43.72	50.96
TraesCS4D01G141500.1	Wheat	nucleus	43.72	50.31
Os11t0702400-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	45.9	49.41
TraesCS4B01G143400.1	Wheat	nucleus	36.07	40.74
EER93193	Sorghum	cytosol, nucleus, plastid	30.05	36.91
PGSC0003DMT400060523	Potato	mitochondrion	23.5	31.16
EER93194	Sorghum	nucleus, plastid	30.6	30.6
EER90627	Sorghum	cytosol, mitochondrion, nucleus	22.95	28.77
VIT_06s0004g04180.t01	Wine grape	nucleus	24.59	28.3
Solyc05g054650.1.1	Tomato	plastid	23.5	28.29
GSMUA_Achr10P...	Banana	nucleus	27.87	27.13
Solyc05g054660.1.1	Tomato	nucleus, plastid	23.5	25.75
KRH01600	Soybean	cytosol, extracellular, nucleus	24.59	25.71
KRH70509	Soybean	nucleus	24.04	24.44
KRG90559	Soybean	nucleus	22.95	24.28
EES18355	Sorghum	nucleus	26.78	23.45
VIT_13s0019g00480.t01	Wine grape	nucleus	22.4	23.3
OQU84076	Sorghum	nucleus	28.96	23.14
OQU87825	Sorghum	nucleus	23.5	23.12
EER92453	Sorghum	nucleus	24.04	22.34
KRH36195	Soybean	extracellular	22.4	22.16
EES03852	Sorghum	cytosol	27.32	21.64
KXG21109	Sorghum	nucleus	22.4	20.3
PGSC0003DMT400060463	Potato	nucleus	22.4	19.71
KXG20985	Sorghum	nucleus, plastid	25.14	16.73
EES07783	Sorghum	nucleus	25.68	12.02
EES10410	Sorghum	nucleus	25.68	11.72

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:8076353	UniProt:C5Y8H8	EnsemblPlants:EES10296	ProteinID:EES10296
ProteinID:EES10296.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR26374	PANTHER:PTHR26374:SF171	SMART:SM00355	EnsemblPlantsGene:SORBI_3005G226100	SUPFAM:SSF57667	UniParc:UPI0001A86A75
RefSeq:XP_002451308.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:71302053..71302604

Molecular Weight (calculated)

19355.1 Da

IEP (calculated)

10.229

GRAVY (calculated)

-0.223

Length

183 amino acids

Sequence
(BLAST)

001: MATTTTERPT ATASNHTQLL RLYLSLSTTA SKVIAKKQHG GVICSHQQQQ HRAGGGAFRC KTCGRAFPTF QALGGHRTSH KRPLVRAHGL DLLLGARPGK
101: GAAATDVHRC TTCAAVFPTG QALGGHMRRH RAAAAAAAFD FNVAVHGESE TAARVAVDAC LSGEMQDESE DDVAGPIRLF KFI

Best Arabidopsis Sequence Match ( AT3G53600.1 )
(BLAST)

001: MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN

Arabidopsis Description

At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.