CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012430_P001	Maize	nucleus	70.56	77.25
Zm00001d042934_P001	Maize	nucleus	70.13	72.0
TraesCS3A01G356100.1	Wheat	nucleus	58.01	65.69
TraesCS3D01G350100.1	Wheat	nucleus	57.14	65.35
HORVU3Hr1G086840.1	Barley	nucleus	57.58	65.2
TraesCS3B01G389000.1	Wheat	nucleus	58.44	64.9
HORVU3Hr1G086790.2	Barley	nucleus	53.25	62.12
Os01t0838600-00	Rice	nucleus	56.28	59.91
TraesCS3D01G350200.1	Wheat	nucleus	53.25	59.71
TraesCS3A01G356200.1	Wheat	nucleus	55.41	51.41
TraesCS3B01G389100.1	Wheat	nucleus	55.41	49.81
PGSC0003DMT400060523	Potato	mitochondrion	28.57	47.83
VIT_06s0004g04180.t01	Wine grape	nucleus	32.9	47.8
Solyc05g054650.1.1	Tomato	plastid	30.3	46.05
EER90627	Sorghum	cytosol, mitochondrion, nucleus	28.57	45.21
VIT_13s0019g00480.t01	Wine grape	nucleus	34.2	44.89
GSMUA_Achr11P...	Banana	nucleus	29.0	44.37
GSMUA_Achr5P28550_001	Banana	nucleus	32.03	43.27
KRH01600	Soybean	cytosol, extracellular, nucleus	32.47	42.86
GSMUA_Achr6P33180_001	Banana	nucleus	24.68	42.54
KRH70509	Soybean	nucleus	32.9	42.22
Solyc05g054660.1.1	Tomato	nucleus, plastid	30.3	41.92
KRG90559	Soybean	nucleus	29.87	39.88
EES18355	Sorghum	nucleus	34.63	38.28
KXG21109	Sorghum	nucleus	33.33	38.12
KRH36195	Soybean	extracellular	29.0	36.22
EER93193	Sorghum	cytosol, nucleus, plastid	22.08	34.23
EER92453	Sorghum	nucleus	28.57	33.5
PGSC0003DMT400060463	Potato	nucleus	29.0	32.21
OQU87825	Sorghum	nucleus	25.54	31.72
EER93194	Sorghum	nucleus, plastid	22.51	28.42
EES10296	Sorghum	plastid	21.64	27.32
KXG20985	Sorghum	nucleus, plastid	29.87	25.09
OQU84076	Sorghum	nucleus	20.35	20.52
EES07783	Sorghum	nucleus	29.0	17.14
EES10410	Sorghum	nucleus	27.27	15.71

Protein Annotations

MapMan:15.5.15	EntrezGene:8085444	UniProt:C5XP39	EnsemblPlants:EES03852	ProteinID:EES03852	ProteinID:EES03852.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:IPR013087	PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374
PANTHER:PTHR26374:SF162	SMART:SM00355	EnsemblPlantsGene:SORBI_3003G349600	SUPFAM:SSF57667	UniParc:UPI0001A858E4	RefSeq:XP_002458732.1
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:66942482..66943837

Molecular Weight (calculated)

25045.2 Da

IEP (calculated)

8.757

GRAVY (calculated)

-0.353

Length

231 amino acids

Sequence
(BLAST)

001: MAKRERAAWE VEAGAAADTA RLLMLLAQAQ QQHLLQQHAH HHHHHHHGVG VPPFPAGRAA VHGRVFECKT CSRQFPTFQA LGGHRASHKR PRVLQQQQLQ
101: QQQTVVADHA GQLCLGRQPL QLPLPTTTTP QQAKPRVHEC PVCGLEFAVG QALGGHMRRH RAEAEAEATE APSKVMMRPA HDKTCDVAGG ICLDLNLTPS
201: ENCAKCRSVV VLGAAAGQGV HKTLAMLDCS L

Best Arabidopsis Sequence Match ( AT3G53600.1 )
(BLAST)

001: MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN

Arabidopsis Description

At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.