Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G356100.1 | Wheat | nucleus | 64.06 | 68.14 |
| TraesCS3D01G350100.1 | Wheat | nucleus | 63.13 | 67.82 |
| TraesCS3B01G389000.1 | Wheat | nucleus | 63.59 | 66.35 |
| HORVU3Hr1G086840.1 | Barley | nucleus | 61.29 | 65.2 |
| HORVU3Hr1G086790.2 | Barley | nucleus | 56.22 | 61.62 |
| TraesCS3D01G350200.1 | Wheat | nucleus | 58.06 | 61.16 |
| Zm00001d012430_P001 | Maize | nucleus | 55.3 | 56.87 |
| EES03852 | Sorghum | cytosol | 59.91 | 56.28 |
| Zm00001d042934_P001 | Maize | nucleus | 58.06 | 56.0 |
| TraesCS3A01G356200.1 | Wheat | nucleus | 60.37 | 52.61 |
| TraesCS3B01G389100.1 | Wheat | nucleus | 62.21 | 52.53 |
| PGSC0003DMT400060523 | Potato | mitochondrion | 33.18 | 52.17 |
| VIT_06s0004g04180.t01 | Wine grape | nucleus | 37.33 | 50.94 |
| Solyc05g054650.1.1 | Tomato | plastid | 35.02 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 33.18 | 47.68 |
| VIT_13s0019g00480.t01 | Wine grape | nucleus | 37.79 | 46.59 |
| Solyc05g054660.1.1 | Tomato | nucleus, plastid | 35.48 | 46.11 |
| GSMUA_Achr5P28550_001 | Banana | nucleus | 35.48 | 45.03 |
| KRH01600 | Soybean | cytosol, extracellular, nucleus | 35.48 | 44.0 |
| KRG90559 | Soybean | nucleus | 34.56 | 43.35 |
| KRH70509 | Soybean | nucleus | 35.48 | 42.78 |
| GSMUA_Achr6P33180_001 | Banana | nucleus | 25.81 | 41.79 |
| Os05t0461200-00 | Rice | cytosol | 37.79 | 39.81 |
| KRH36195 | Soybean | extracellular | 33.64 | 39.46 |
| Os05t0114400-01 | Rice | nucleus | 35.94 | 39.39 |
| Os03t0279700-01 | Rice | nucleus | 31.34 | 35.6 |
| PGSC0003DMT400060463 | Potato | nucleus | 34.1 | 35.58 |
| Os03t0820400-01 | Rice | nucleus | 23.04 | 34.72 |
| Os01t0839100-01 | Rice | nucleus | 25.35 | 32.16 |
| Os03t0820300-01 | Rice | nucleus | 24.88 | 31.76 |
| Os11t0702300-00 | Rice | nucleus | 23.5 | 31.29 |
| Os05t0460900-00 | Rice | cytosol | 22.12 | 27.59 |
| Os11t0702400-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.2 | 27.06 |
| Os04t0162500-01 | Rice | vacuole | 28.11 | 21.11 |
| Os02t0823900-00 | Rice | cytosol, nucleus, peroxisome | 29.95 | 18.9 |
Protein Annotations
| MapMan:15.5.15 | EntrezGene:4327377 | ProteinID:BAD81695.1 | ProteinID:BAF06661.2 | ProteinID:BAS75135.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:IPR013087 | EnsemblPlantsGene:Os01g0838600 | EnsemblPlants:Os01t0838600-00 | PFAM:PF13912 | ScanProsite:PS00028 | PFscan:PS50157 |
| PANTHER:PTHR26374 | PANTHER:PTHR26374:SF162 | UniProt:Q5NA12 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000049E84C |
| RefSeq:XP_015633806.1 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : |
Description
Zinc finger, C2H2-like domain containing protein. (Os01t0838600-00)
Coordinates
chr1:-:35965949..35966946
Molecular Weight (calculated)
22739.3 Da
IEP (calculated)
9.673
GRAVY (calculated)
-0.345
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKRSRSMWD MQEFVGSVDT ARVLMLLAQQ SQHGLLGGGG FAAGAQPVVV RGGAHDRVFE CKTCNRQFPT FQALGGHRAS HKRPRQQQQH ALGGGAGADD
101: AGLCLGRQPT PPRPQPAKPR VHECPVCGLE FPIGQALGGH MRRHRAEAEA AATTTTTTTK NGDVGKAAAV KACDGGGVCL DLNLTPSENR AKCRNVVGLG
201: AGGQGVHKAL AMLDCFL
101: AGLCLGRQPT PPRPQPAKPR VHECPVCGLE FPIGQALGGH MRRHRAEAEA AATTTTTTTK NGDVGKAAAV KACDGGGVCL DLNLTPSENR AKCRNVVGLG
201: AGGQGVHKAL AMLDCFL
001: MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
Arabidopsis Description
At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.