Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012430_P001 | Maize | nucleus | 68.89 | 73.46 |
| EES03852 | Sorghum | cytosol | 72.0 | 70.13 |
| HORVU3Hr1G086840.1 | Barley | nucleus | 56.0 | 61.76 |
| TraesCS3A01G356100.1 | Wheat | nucleus | 55.56 | 61.27 |
| TraesCS3D01G350100.1 | Wheat | nucleus | 54.67 | 60.89 |
| TraesCS3B01G389000.1 | Wheat | nucleus | 55.11 | 59.62 |
| Os01t0838600-00 | Rice | nucleus | 56.0 | 58.06 |
| HORVU3Hr1G086790.2 | Barley | nucleus | 50.22 | 57.07 |
| TraesCS3D01G350200.1 | Wheat | nucleus | 52.0 | 56.8 |
| TraesCS3A01G356200.1 | Wheat | nucleus | 52.44 | 47.39 |
| PGSC0003DMT400060523 | Potato | mitochondrion | 28.89 | 47.1 |
| VIT_06s0004g04180.t01 | Wine grape | nucleus | 32.44 | 45.91 |
| TraesCS3B01G389100.1 | Wheat | nucleus | 52.0 | 45.53 |
| Solyc05g054650.1.1 | Tomato | plastid | 30.67 | 45.39 |
| VIT_13s0019g00480.t01 | Wine grape | nucleus | 35.11 | 44.89 |
| Zm00001d034639_P001 | Maize | nucleus | 29.33 | 44.0 |
| GSMUA_Achr11P... | Banana | nucleus | 28.89 | 43.05 |
| KRH01600 | Soybean | cytosol, extracellular, nucleus | 33.33 | 42.86 |
| KRH70509 | Soybean | nucleus | 33.78 | 42.22 |
| GSMUA_Achr5P28550_001 | Banana | nucleus | 32.0 | 42.11 |
| KRG90559 | Soybean | nucleus | 32.0 | 41.62 |
| Solyc05g054660.1.1 | Tomato | nucleus, plastid | 30.67 | 41.32 |
| Zm00001d038379_P001 | Maize | nucleus | 33.33 | 40.32 |
| GSMUA_Achr6P33180_001 | Banana | nucleus | 24.0 | 40.3 |
| Zm00001d028667_P001 | Maize | nucleus | 31.11 | 38.46 |
| Zm00001d035609_P001 | Maize | nucleus | 32.89 | 37.37 |
| KRH36195 | Soybean | extracellular | 30.67 | 37.3 |
| Zm00001d012967_P001 | Maize | plastid | 20.44 | 36.51 |
| Zm00001d047786_P001 | Maize | nucleus | 32.0 | 36.18 |
| Zm00001d012427_P001 | Maize | nucleus | 24.89 | 33.14 |
| Zm00001d034642_P001 | Maize | nucleus, plastid | 21.33 | 33.1 |
| Zm00001d042933_P001 | Maize | nucleus | 25.78 | 31.87 |
| PGSC0003DMT400060463 | Potato | nucleus | 29.33 | 31.73 |
| Zm00001d034641_P001 | Maize | nucleus | 22.22 | 28.9 |
| Zm00001d012968_P001 | Maize | nucleus | 21.33 | 27.43 |
| Zm00001d036330_P001 | Maize | nucleus | 29.33 | 26.83 |
| Zm00001d045211_P001 | Maize | nucleus | 20.44 | 25.84 |
| Zm00001d051865_P001 | Maize | nucleus | 30.22 | 20.61 |
| Zm00001d024866_P001 | Maize | nucleus | 29.78 | 18.31 |
| Zm00001d004439_P001 | Maize | nucleus | 28.44 | 17.83 |
Protein Annotations
| EnsemblPlants:Zm00001d042934_P001 | EnsemblPlants:Zm00001d042934_T001 | EnsemblPlantsGene:Zm00001d042934 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF202 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:ONM36572.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0002207DBF | UniProt:A0A1D6N7K6 | MapMan:15.5.15 | : | : |
Description
zinc finger protein6Zinc finger%2C C2H2 type family protein
Coordinates
chr3:+:184481243..184482319
Molecular Weight (calculated)
24319.5 Da
IEP (calculated)
9.575
GRAVY (calculated)
-0.300
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MPYTTACLPA ARRSRVVLGV NQLDRAMQPP TTAKRDRAAW EADAGAADTA RLLMLLAQAQ AQQQQRLLQH AYHHGVAPLF PAGRVFECKT CSRQFPTFQA
101: LGGHRASHKR PRALQQQQPV VVADDHDAGL CLGRQPPKPR RVHECPVCGL EFAIGQALGG HMRRHRADAE VRPPPDKARD VAGGICLDLN LTPSENCAKC
201: RSVVVLGAAA GQGVHKALAM LDCSL
101: LGGHRASHKR PRALQQQQPV VVADDHDAGL CLGRQPPKPR RVHECPVCGL EFAIGQALGG HMRRHRADAE VRPPPDKARD VAGGICLDLN LTPSENCAKC
201: RSVVVLGAAA GQGVHKALAM LDCSL
001: MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
Arabidopsis Description
At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.