CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028667_P001	Maize	nucleus	83.25	90.11
Zm00001d047786_P001	Maize	nucleus	85.79	84.92
TraesCS4B01G203400.1	Wheat	nucleus	65.99	71.04
TraesCS4A01G101000.1	Wheat	nucleus	64.97	70.33
Os03t0279700-01	Rice	nucleus	67.51	69.63
TraesCS4D01G204300.1	Wheat	nucleus	62.44	67.96
HORVU4Hr1G058720.1	Barley	nucleus	64.47	67.91
HORVU4Hr1G058690.1	Barley	nucleus	61.93	64.89
TraesCS4A01G101100.1	Wheat	nucleus	60.41	62.3
PGSC0003DMT400060523	Potato	mitochondrion	36.04	51.45
GSMUA_Achr9P03210_001	Banana	nucleus	36.55	51.43
KRH01600	Soybean	cytosol, extracellular, nucleus	41.12	46.29
Solyc05g054650.1.1	Tomato	plastid	35.53	46.05
KRH70509	Soybean	nucleus	41.12	45.0
VIT_06s0004g04180.t01	Wine grape	nucleus	36.04	44.65
KRG90559	Soybean	nucleus	38.58	43.93
VIT_13s0019g00480.t01	Wine grape	nucleus	38.58	43.18
EER90627	Sorghum	cytosol, mitochondrion, nucleus	31.98	43.15
Solyc05g054660.1.1	Tomato	nucleus, plastid	35.03	41.32
KXG21109	Sorghum	nucleus	42.13	41.09
KRH36195	Soybean	extracellular	38.07	40.54
PGSC0003DMT400060463	Potato	nucleus	33.5	31.73
OQU87825	Sorghum	nucleus	29.44	31.18
EES18355	Sorghum	nucleus	31.98	30.14
EER93193	Sorghum	cytosol, nucleus, plastid	22.34	29.53
EES03852	Sorghum	cytosol	33.5	28.57
EER93194	Sorghum	nucleus, plastid	25.38	27.32
EES10296	Sorghum	plastid	22.34	24.04
KXG20985	Sorghum	nucleus, plastid	30.96	22.18
OQU84076	Sorghum	nucleus	23.35	20.09
EES10410	Sorghum	nucleus	34.01	16.71
EES07783	Sorghum	nucleus	31.47	15.86

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:8081474	UniProt:C5WPB8	EnsemblPlants:EER92453	ProteinID:EER92453
ProteinID:EER92453.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR26374	PANTHER:PTHR26374:SF162	SMART:SM00355	EnsemblPlantsGene:SORBI_3001G416200	SUPFAM:SSF57667	UniParc:UPI0001A82C74
RefSeq:XP_002465455.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:69775147..69779154

Molecular Weight (calculated)

20882.8 Da

IEP (calculated)

7.009

GRAVY (calculated)

-0.349

Length

197 amino acids

Sequence
(BLAST)

001: MAYGKRTRQK AEEMVWLPDG ADVARFLLLF SGDHQHHYHG AGGVASTDAA SSAPERVFEC KTCNRQFPSF QALGGHRASH KKPRLADGGV DAAAAEPPKP
101: KVHGCSICGL EFAIGQALGG HMRRHRAADQ ADGGSPGLGL GLSLGTGLLA PKDDSGKKTA PPAELVLDLN AVPELEEEQD RARLSIEFPV AVVDFLR

Best Arabidopsis Sequence Match ( AT5G59820.1 )
(BLAST)

001: MVAISEIKST VDVTAANCLM LLSRVGQENV DGGDQKRVFT CKTCLKQFHS FQALGGHRAS HKKPNNDALS SGLMKKVKTS SHPCPICGVE FPMGQALGGH
101: MRRHRNESGA AGGALVTRAL LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY

Arabidopsis Description

ZAT12Zinc finger protein ZAT12 [Source:UniProtKB/Swiss-Prot;Acc:Q42410]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.