CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035609_P001	Maize	nucleus	78.22	79.8
Os05t0114400-01	Rice	nucleus	75.25	76.77
TraesCS1A01G040100.1	Wheat	nucleus	57.92	68.42
TraesCS1D01G041700.1	Wheat	nucleus	64.36	68.42
TraesCS1B01G053000.1	Wheat	nucleus	63.37	67.37
TraesCS1B01G053200.1	Wheat	nucleus	62.87	67.2
HORVU1Hr1G006920.1	Barley	nucleus	59.41	65.93
TraesCS1A01G040200.1	Wheat	nucleus	64.85	65.5
TraesCS1D01G041500.1	Wheat	nucleus	60.4	64.89
TraesCS1A01G040300.1	Wheat	nucleus	60.4	64.55
TraesCS1D01G041600.1	Wheat	nucleus	60.89	64.4
TraesCS1B01G053100.1	Wheat	nucleus	59.41	63.49
HORVU1Hr1G006910.1	Barley	nucleus	59.41	62.5
GSMUA_Achr9P03210_001	Banana	nucleus	36.14	52.14
PGSC0003DMT400060523	Potato	mitochondrion	34.65	50.72
VIT_06s0004g04180.t01	Wine grape	nucleus	39.11	49.69
Solyc05g054650.1.1	Tomato	plastid	36.63	48.68
VIT_13s0019g00480.t01	Wine grape	nucleus	40.1	46.02
KRH01600	Soybean	cytosol, extracellular, nucleus	38.61	44.57
KRG90559	Soybean	nucleus	37.62	43.93
KRH70509	Soybean	nucleus	39.11	43.89
Solyc05g054660.1.1	Tomato	nucleus, plastid	35.15	42.52
EER90627	Sorghum	cytosol, mitochondrion, nucleus	30.69	42.47
EER92453	Sorghum	nucleus	41.09	42.13
KRH36195	Soybean	extracellular	38.12	41.62
PGSC0003DMT400060463	Potato	nucleus	34.65	33.65
EES03852	Sorghum	cytosol	38.12	33.33
EES18355	Sorghum	nucleus	34.16	33.01
EER93193	Sorghum	cytosol, nucleus, plastid	22.28	30.2
OQU87825	Sorghum	nucleus	26.24	28.49
EER93194	Sorghum	nucleus, plastid	24.26	26.78
EES10296	Sorghum	plastid	20.3	22.4
KXG20985	Sorghum	nucleus, plastid	29.7	21.82
OQU84076	Sorghum	nucleus	20.3	17.9
EES07783	Sorghum	nucleus	33.17	17.14
EES10410	Sorghum	nucleus	30.69	15.46

Protein Annotations

EnsemblPlants:KXG21109	EnsemblPlantsGene:SORBI_3009G016300	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF162	PFAM:PF13912
PFscan:PS50157	ProteinID:KXG21109	ProteinID:KXG21109.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667
UniParc:UPI00081AC7F4	UniProt:A0A1B6P5V0	MapMan:15.5.15	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:1532031..1532648

Molecular Weight (calculated)

21348.7 Da

IEP (calculated)

7.022

GRAVY (calculated)

-0.230

Length

202 amino acids

Sequence
(BLAST)

001: MKRFAVQESE MARVLMLMSH SHGQDQSLPL PVIAAGRGDG AAPERVFTCN RVFPSFQALG GHRASHKKPR LDGDGDPALA KPKLHGCSIC GLEFAIGQAL
101: GGHMRRHRAM TGGMPMPPPA TTRIVVDKKP DGDVVGIIHH DHGHGGVKPG GLWLDLNHPP CDDDGCDAEV ECGHINAAAA AGGITFHQFL DTGTMAVDCL
201: GY

Best Arabidopsis Sequence Match ( AT2G28710.1 )
(BLAST)

001: MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF

Arabidopsis Description

At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.