CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038379_P001	Maize	nucleus	71.29	80.11
Os05t0461200-00	Rice	cytosol	45.93	46.6
PGSC0003DMT400060523	Potato	mitochondrion	28.23	42.75
EER90627	Sorghum	cytosol, mitochondrion, nucleus	29.67	42.47
GSMUA_Achr11P...	Banana	nucleus	30.14	41.72
TraesCS1A01G286100.1	Wheat	nucleus	35.89	41.67
Solyc05g054650.1.1	Tomato	plastid	30.14	41.45
VIT_13s0019g00480.t01	Wine grape	nucleus	34.45	40.91
VIT_06s0004g04180.t01	Wine grape	nucleus	31.1	40.88
KRH01600	Soybean	cytosol, extracellular, nucleus	31.58	37.71
GSMUA_Achr5P28550_001	Banana	nucleus	30.62	37.43
GSMUA_Achr6P33180_001	Banana	nucleus	23.92	37.31
KRH70509	Soybean	nucleus	32.06	37.22
KRG90559	Soybean	nucleus	30.62	36.99
Solyc05g054660.1.1	Tomato	nucleus, plastid	29.19	36.53
EES03852	Sorghum	cytosol	38.28	34.63
KXG21109	Sorghum	nucleus	33.01	34.16
KRH36195	Soybean	extracellular	30.14	34.05
OQU87825	Sorghum	nucleus	29.19	32.8
EER92453	Sorghum	nucleus	30.14	31.98
EER93193	Sorghum	cytosol, nucleus, plastid	22.01	30.87
PGSC0003DMT400060463	Potato	nucleus	28.23	28.37
EES10296	Sorghum	plastid	23.45	26.78
EER93194	Sorghum	nucleus, plastid	23.45	26.78
OQU84076	Sorghum	nucleus	22.01	20.09
KXG20985	Sorghum	nucleus, plastid	24.88	18.91
EES07783	Sorghum	nucleus	27.27	14.58
EES10410	Sorghum	nucleus	27.27	14.21

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:8072552	UniProt:C5YZA6	EnsemblPlants:EES18355	ProteinID:EES18355
ProteinID:EES18355.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR26374	PANTHER:PTHR26374:SF202	SMART:SM00355	EnsemblPlantsGene:SORBI_3009G164600	SUPFAM:SSF57667	UniParc:UPI0001A888FA
RefSeq:XP_002439925.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:52078634..52079263

Molecular Weight (calculated)

22164.3 Da

IEP (calculated)

8.565

GRAVY (calculated)

-0.468

Length

209 amino acids

Sequence
(BLAST)

001: MAETAGVGVD AASVLMLLSR RQQQQQQQQQ GGATTTAELG ARGRGRGRGR VFECKTCGRR FPTFQALGGH RASHRRPKPY YCPYPYGSEP GLRRTRLDEP
101: PHNGECAPRL HGCPICGLEF AVGQALGGHM RRHRTAAAVS GCDELRSGDA NATSVEEADV GAAAGCAGGI CLDLSLAPSE NCVRCRNNAV LGNTAHDARK
201: SLILDCPPL

Best Arabidopsis Sequence Match ( AT2G28710.1 )
(BLAST)

001: MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF

Arabidopsis Description

At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.