Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0702300-00 | Rice | nucleus | 37.12 | 52.15 |
| EER93193 | Sorghum | cytosol, nucleus, plastid | 23.58 | 36.24 |
| EER93194 | Sorghum | nucleus, plastid | 24.45 | 30.6 |
| PGSC0003DMT400060523 | Potato | mitochondrion | 17.9 | 29.71 |
| OQU87825 | Sorghum | nucleus | 23.58 | 29.03 |
| EES10296 | Sorghum | plastid | 23.14 | 28.96 |
| EER90627 | Sorghum | cytosol, mitochondrion, nucleus | 18.34 | 28.77 |
| Solyc05g054650.1.1 | Tomato | plastid | 18.78 | 28.29 |
| VIT_06s0004g04180.t01 | Wine grape | nucleus | 18.34 | 26.42 |
| Solyc05g054660.1.1 | Tomato | nucleus, plastid | 18.78 | 25.75 |
| KRG90559 | Soybean | nucleus | 19.21 | 25.43 |
| VIT_13s0019g00480.t01 | Wine grape | nucleus | 19.21 | 25.0 |
| KRH01600 | Soybean | cytosol, extracellular, nucleus | 18.78 | 24.57 |
| KRH36195 | Soybean | extracellular | 19.65 | 24.32 |
| KRH70509 | Soybean | nucleus | 18.78 | 23.89 |
| EER92453 | Sorghum | nucleus | 20.09 | 23.35 |
| EES18355 | Sorghum | nucleus | 20.09 | 22.01 |
| EES03852 | Sorghum | cytosol | 20.52 | 20.35 |
| KXG21109 | Sorghum | nucleus | 17.9 | 20.3 |
| PGSC0003DMT400060463 | Potato | nucleus | 17.47 | 19.23 |
| KXG20985 | Sorghum | nucleus, plastid | 20.52 | 17.09 |
| EES07783 | Sorghum | nucleus | 20.52 | 12.02 |
| EES10410 | Sorghum | nucleus | 19.21 | 10.97 |
Protein Annotations
| EnsemblPlants:OQU84076 | EnsemblPlantsGene:SORBI_3005G225700 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF171 | PFAM:PF13912 |
| PFscan:PS50157 | ProteinID:OQU84076 | ProteinID:OQU84076.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI000B424FA2 | UniProt:A0A1Z5RL32 | MapMan:15.5.15 | : | : |
Description
hypothetical protein
Coordinates
chr5:-:71215844..71217070
Molecular Weight (calculated)
24808.1 Da
IEP (calculated)
9.277
GRAVY (calculated)
-0.617
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSRIKRARD GDDDDDDAIS RGSAIVVDVP HHGEDDDDIH VVDEEEEEDQ RRRRRAACHV LLSLSLSCRS SSSTSSPSTS CSIQDDQAAA ATGTGTGTGI
101: APPPPLKLIK RRRRRRRRRG LQVDDVFECQ TCGRRFPTFQ ALGGHRTSHL RRPAATKKPP QSSKAVLVHA CATCGLGFST GQALGGHMRR HRLGRADSVG
201: SGDVDLTQII VHGRPTSASS SLQLLNLFV
101: APPPPLKLIK RRRRRRRRRG LQVDDVFECQ TCGRRFPTFQ ALGGHRTSHL RRPAATKKPP QSSKAVLVHA CATCGLGFST GQALGGHMRR HRLGRADSVG
201: SGDVDLTQII VHGRPTSASS SLQLLNLFV
001: MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
Arabidopsis Description
At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.